Chr:
Chr1
Start:
16201970
End:
16205191
Strand:
+
Ref_name:
LOC107279876
Sequence
(XR_001542681.2):
AUCUAAAUUAAUAAAUAAUUAAAGUAGGUUCACUGUGUAGUGGACACGAGGUUUUUGAAUAUACACAUGGAACUCGGUCUACAUGAAGUCAUGAACAAACAAACACCUAAUUGAGAAACAAACCAUAUGAUAAUUUUAAUAAUACGUUCUUGAGGAAGUGCCCGGUGCCUGGUAGCUUGAAGUGGUCAAAUUUCAAUAAUACGUUAUCGAGGAAGUGCCUGGUAUCUUGAAGUGACCACUGACGGUGACCUAUACACCGACGGAGACCAUGCAGGUGGUGUUGAGUAGGCCUAUGUGAGAUUUAAGAGGCGGUGUAGAGUGUGAAGAUACUCGCAAAGUCGCAAUGGGAGGCAAAGUGGUCGGUGUCACAAGGCAUCGGUGAGGCCCAACAGUAAAAGUGGUUUGAUGAAAAUGACAACGUACUAGAUCCCGUUGCAACGCACGGACAUAUUUGCUAGUUCAAUAAUACUCCUAUGUACAGUCCACAUGUCAAAGCCCAACAGAAAAGCCCACCUAGACCACCUUCUUCCUCUUCUCUCUUUUUCUCGUUCUCCCCUUCUCUCCCUCACGUUCUCUCCAGCGCCGCCGCUUCCUAGGCAGCGCCGGCGACCUCCCCUGCGCCGGCUGCCACACCCCACUCCGGCGACCCCUCUAGCCGUCGCCGGGCUGAAUCAGCUUCUUGGCUCCUCACUUCUCUGCCCCUAAGCUAACCCUAGCCUCUGACCUCUUCAACCUAAGAUGCAACCGGCGGCCAAUUCUGGCGAGAUAAGGAUUUAGGGAAGUUUCCCAGGCCCCUACCGCUGGAUCUACUCUCCUCCCCUAUUUUAAUUUUUGGUUACCUCUGAUGAUUCUACCGUGAUUGAAAAAUAUGUGGUUCAGCUCCUCCUUCAGAAAUCCAAGUCUUCUCUUCUACUGCUGCUCUUCUGGAUCUAAGGUGAUUUUGCUAGAACUGAGCUUCUCCACCUUGAGCUUGGUUGAUUGUUCCCCCUCUUGAACUGAACCCCCUGCUCUACUUGGAACUCAGGUAAUUCUCCUCCUUGGCUCUUGCUCUACUGGUAAUACUUGACUGCUUCCUGACAGGAUCUGCUACUGGUGAUUCUCUUCCUCCUCUUGAGACUAAUCCUCUUUCUUGAUUUUCGCUCUAUCUUGCUUCUUGACCUGAGUUUCAUCUCCUCCCAUAGUUGGAGUUCAUCCAAGAACUGAACACCUCUACUUUUCCUUCAGAUUUGGUUCACCACUCUCUGAUUGCUUGGCCAUGGUUACUACUACUUGUUGAUUCAUGUAUUGGUUUGAGCUGGACUUCAGUUGAGCUAUUUCUGUCCGGGUGGAGCUAACAUUCUAGCUGAUUUUCCUAAGCUUGGUUCUAUGAUUCUAACUACUACUGCCGCAGCUGCUGCUAUUGCUCUACUGCGGUAGGUGCUUGAGGUGGUUUUCCAGCCGAUGCAACCGAGGCUGGGGUUCACUGAAUAGUUUGGUUGAUAUAUAUGUGAAUUUGGUGAAGACUAGGUGACUCACCUACUUUAGUUUUGGUGGUUGUUUCACUGACUGACACCUAAGCAGUGCUUGAUCGGUGGAGUAAUGUGGGAUUUCACUAAAUUUUUCUAGUUACAUAAAUUCUGAUACAAUUAGGUACUUUUGCACUUGAGUCCCUCGGGGUCUCUAAAAUUGAAGUUUACUCUGAGAUUAGGGACUGAUUUGUAAUUGUUCUAGAACUCAAGAGUUUUUCUGAAAACUAAAUAAUUAUUGAAUCUUUGACUGAGAUGGUUCAGUUUAUGAUAUGAUAUCCAUAAGCACCAUGCAUAUGCACAAUA
Sequence
(XR_001542682.2):
GGCCCAUAAUAAUUAGGAAAUCUAAAUUAAUAAAUAAUUAAAGUAGGUUCACUGUGUAGUGGACACGAGGUUUUUGAAUAUACACAUGGAACUCGGUCUACAUGAAGUCAUGAACAAACAAACACCUAAUUGAGAAACAAACCAUAUGAUAAUUUUAAUAAUACGUUCUUGAGGAAGUGCCCGGUGCCUGGUAGCUUGAAGUGGUCAAAUUUCAAUAAUACGUUAUCGAGGAAGUGCCUGGUAUCUUGAAGUGACCACUGACGGUGACCUAUACACCGACGGAGACCAUGCAGGUGGUGUUGAGUAGGCCUAUGUGAGAUUUAAGAGGCGGUGUAGAGUGUGAAGAUACUCGCAAAGUCGCAAUGGGAGGCAAAGUGGUCGGUGUCACAAGGCAUCGGUGAGGCCCAACAGUAAAAGUGGUUUGAUGAAAAUGACAACGUACUAGAUCCCGUUGCAACGCACGGACAUAUUUGCUAGUUCAAUAAUACUCCUAUGUACAGUCCACAUGUCAAAGCCCAACAGAAAAGCCCACCUAGACCACCUUCUUCCUCUUCUCUCUUUUUCUCGUUCUCCCCUUCUCUCCCUCACGUUCUCUCCAGCGCCGCCGCUUCCUAGGCAGCGCCGGCGACCUCCCCUGCGCCGGCUGCCACACCCCACUCCGGCGACCCCUCUAGCCGUCGCCGGGCUGAAUCAGCUUCUUGGCUCCUCACUUCUCUGCCCCUAAGCUAACCCUAGCCUCUGACCUCUUCAACCUAAGAUGCAACCGGCGGCCAAUUCUGGCGAGAUAAGGAUUUAGGGAAGUUUCCCAGGCCCCUACCGCUGGAUCUACUCUCCUCCCCUAUUUUAAUUUUUGGUUACCUCUGAUGAUUCUACCGUGAUUGAAAAAUAUGUGGUUCAGCUCCUCCUUCAGAAAUCCAAGUCUUCUCUUCUACUGCUGCUCUUCUGGAUCUAAGGUGAUUUUGCUAGAACUGAGCUUCUCCACCUUGAGCUUGGUUGAUUGUUCCCCCUCUUGAACUGAACCCCCUGCUCUACUUGGAACUCAGGUAAUUCUCCUCCUUGGCUCUUGCUCUACUGGUAAUACUUGACUGCUUCCUGACAGGAUCUGCUACUGAUUUGGUUCACCACUCUCUGAUUGCUUGGCCAUGGUUACUACUACUUGUUGAUUCAUGUAUUGGUUUGAGCUGGACUUCAGUUGAGCUAUUUCUGUCCGGGUGGAGCUAACAUUCUAGCUGAUUUUCCUAAGCUUGGUUCUAUGAUUCUAACUACUACUGCCGCAGCUGCUGCUAUUGCUCUACUGCGGUAGGUGCUUGAGGUGGUUUUCCAGCCGAUGCAACCGAGGCUGGGGUUCACUGAAUAGUUUGGUUGAUAUAUAUGUGAAUUUGGUGAAGACUAGGUGACUCACCUACUUUAGUUUUGGUGGUUGUUUCACUGACUGACACCUAAGCAGUGCUUGAUCGGUGGAGUAAUGUGGGAUUUCACUAAAUUUUUCUAGUUACAUAAAUUCUGAUACAAUUAGGUACUUUUGCACUUGAGUCCCUCGGGGUCUCUAAAAUUGAAGUUUACUCUGAGAUUAGGGACUGAUUUGUAAUUGUUCUAGAACUCAAGAGUUUUUCUGAAAACUAAAUAAUUAUUGAAUCUUUGACUGAGAUGGUUCAGUUUAUGAUAUGAUAUCCAUAAGCACCAUGCAUAUGCACAAUA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
0.2%
ME_num:
MEP:
13.41%
HE_num:
HEP:
86.18%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
flower
Tau :
0.43
Avg Expression:
14.39
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | -3.75180750732859 | 3.36555464838117e-93 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | -3.34374543363036 | 3.89449899349675e-84 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -2.80395643866194 | 3.65332405474481e-74 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -2.58687768216303 | 3.49294305147922e-33 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -2.44618743272734 | 2.53866950227861e-46 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -2.94461525316669 | 4.15549249820641e-60 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -3.36789060931993 | 2.16360674176378e-97 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | -1.11126264164447 | 3.09678683291733e-15 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -2.85353524896089 | 8.0274413828591e-78 |
| 10 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -3.18855951944586 | 9.85310966483253e-88 |
| 11 | Nipponbare // leaf // "wild_type,control,2"--/--Nipponbare // leaf // "wild_type,drought,2" | 1.08709429737276 | 0.000123374844640989 |
| 12 | Nipponbare // leaf // control--/--Nipponbare // leaf // drought | 1.08700584285436 | 0.000129874428101934 |
| 13 | Nipponbare // leaf // "wild_type,control,1"--/--Nipponbare // leaf // "wild_type,drought,1" | 1.08691164829148 | 0.000124941005834067 |
| 14 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -3.17305664606028 | 4.38046288929215e-71 |
| 15 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -3.20928123306768 | 1.25682768074086e-106 |