Chr:
Chr1
Start:
29319471
End:
29321474
Strand:
+
Ref_name:
LOC107279867
Sequence
(XR_001542590.2):
CUUUCUCAUGUUUUUUCUUGCUACAAGAUGGAAGAGAUUUCUUACAUCUCUGAAUUGGUCUGGAAAAAGAAUAGUAGGACAAACAGAUUUGGCUGCAGAACUUACUGAACAGCUCUAUACUUUUUAUAGCUAUAAUUGAGACAUGCCUGGGACACAAUGAGACGCUUGAUUAGGACUUGCCGGAGUGCCAUAAUGUUGCGGUGCAGUGAAGCAUGGUAAAACAAUCCAAUAUAUGAUUGCAUAAAGUAAAGACCAAAGACCUGCAUUUGCCAAAAGAGUUGGUUUACCAUGCAAAGGGAAGACUAGCUUUACGAUUCCUUCAUCUUCCAGCCUGGUUAAGAGUGACUCAUUUUGAGUCCAGUGGAACUCUUUAUCGUCAAAGCUGAGAGUUAUAUCAGAAUCGGUCUUGUUCACCUGCAAGUCUCCAUAUCUACCUACUGUCAAAUAAGGAAAUAUGAAGCACAACAAGACUAAUCACUUUGUACAUUAGCUAUAUGUUUUAUUCAUAUCUCAUGUCAAGCGAAAAGAAAAACUUUGAGACUUGAGAGAAUAACCAUAGUAUAAGCAGAAAUAUACUAAACCACUUUCCUAUU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
37.4%
ME_num:
MEP:
56.3%
HE_num:
HEP:
6.1%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
carpel
Tau :
0.82
Avg Expression:
4.46
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 2.19469259362896 | 0.0492100696906436 |
| 2 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS256 | 4.09900101721781 | 1.68183083204187e-07 |
| 3 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP2286 | 3.78217250335335 | 0.00128702385602659 |
| 4 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS279 | 3.14681556899136 | 0.000391368022947065 |
| 5 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_L8 | 4.09111441998175 | 2.90724743941477e-07 |
| 6 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12 | 3.20872041725608 | 1.02216962889653e-05 |
| 7 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_RS105 | 3.21254353179239 | 0.000148260273113472 |