Chr:
Chr1
Start:
596068
End:
596997
Strand:
-
Ref_name:
LOC107279864
Sequence
(XR_001542523.2):
CUUUUUCUCCAUAGCACGCCCAGCGGAAGGGUGAACAUUGGGAAGGGGAUUUUAGGCGGUGGUACGCUGCAAAAUGGGGAAAAAAAAGGAUUUGAUCUUCCAUCGGCAGCAAUAUGUAAGAAGUGUAAAGAGUACUAUGCAGGGUGAAGCUUUAGCUGCAGGAUUUCGCCUUCUGAAAACCGUUCCUCCCUGAGCUGAAAAUGGUGGUAGUACAGGAUAGUACUUACUGCAAAUUGAUGGUCUCGAUUUGGGUGAGCUCGGCGUUGAAGGAACCGUCCCGUGCCGUGGCGUGCUGCCUGAUGCCAAGAACCCUGCACCCAACCCUCCUCAUUCGCUCGUACGGGUUCGUCGACCUGACGCAAAAGCAAAAUUUCAAUUCAGUUCAGUUCAAGUUCAGUAUAUCUCAAGAGAAUUCAGUUGAGUUGAGUUGAGUUGAGUUGAGGAAUCAUUUUGAUGUUACAGUUAGAGUUAGAGUAGAGGUACCUGUAGAGGAAGCUCUUGUCGUGGAGGCCGACGACGAGCGUGGUGGCGGCGAGCUGGUUCACCGUCGCCACCACCGUCUCCCCGACCUCCCCCUCCCGAACCACUAUCUCCACCUUCGCCUGCAUACCAUUUCACAAUUCAACAAGAUGAUUAAUUGCUUCUUUCUUUCUUUGUUUUGAGUUGACCCAACUACCACCAUUGAUUGAUUGAUUGGUUGAUUGGUUUACCUCCGC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
52.03%
ME_num:
MEP:
45.93%
HE_num:
HEP:
1.83%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
crown
Tau :
0.84
Avg Expression:
2.49
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 4.91847946511483 | 0.00880215542703561 |
| 2 | Nipponbare // root // "mock,7_days"--/--Nipponbare // root // "auxin(50CM_2,4_D),7_days" | -2.69508309328402 | 0.000700764385223293 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 3.82007438833896 | 0.0460473005333361 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 3.8456371030923 | 0.0318696450460451 |
| 5 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | -4.32030882970643 | 0.00998832242188087 |