Chr:
Chr1
Start:
33663912
End:
33665355
Strand:
-
Ref_name:
LOC107279860
Sequence
(XR_001542486.2):
CUUUUUCCAAUUAACACAGCGCAAUUAUUCAUAGGCCUAACGGCAAGCAAAUCCACGAAGUAGAGGCCCAGGAUUGGCCACGGAACGGAAGCCUCAAUUCACCCAGAUUUCAUGUCUACGCACAAAACUGGCCCAUUUGGCGCGCCAUAAAGAGGCCAGCCCGUGUCCAUCGCGAUCAGCUUAGGCCAUCCGGCGAGCCCACUCCGGCCACAGCCUUCCUCGUCGCCUCCGGUCUUCAUCGGCGGGCGGCCGCCGGCAAAUGCCACCCCAAGUUCCCAGCGUCCGAGCCAGCUGGCCCAGCGCCGCCACCAAGGCGUCGCCCGCCGGAGGGACAACCCGCAAGUUCAUCCCUCCUUGCCGGUCUCGUCUCCCUCCACGGCCGUCCCGAUUGACGACGAGUGAUGAAAGGCUACAUCGCCGUAGAAGUUCUGAACCGUAAUCUGGACAGCAGUUUUGAUCUUCACUGCAUGGUGCUCAUAUGGCUCUCCUUAGGCGUUGAAGGCAGGGAGCGAGGGAGCGGUGGAUUGAUGCCGAUUUUGGGUCCUGGUUUGCGUGACAAGCUGAUAAGCUGGUUAGGAAGAGUGAAAGGCCAUUGUUUAUAGGAAGAGUGAAAGGCUAUUGUACAGUACAAAUUAUAGAGGCAAGUUUCUCUUCGGCAGCUUGAGAAAUGACAGAAGCAUAGCAUGCAAAUGGAAAAAAAAACAGUUCCUGUGGGAUAACUUGCAUUUUUUGCUGAAAUCAUAAAUUCUAUUUGCCUGUCCAUAUCCUGUGUAUUACUGCUGGAAUUUUGAUGUGUUUUAGGCUUACGUUCCACCAGGCCCCUAUCGGGUUCCUUUUAAAAUGUUAUUGUUUGAGAUAAAACAGUACCCAAAAAUGUAGUAAAUAUCAGGUUAAAUAUGUACGACUUAUUUUAUUUUUUUUUCAUUUCAGUUCCAAGCUACAGAGACAAUAACUCAGAUCACUGUAUUACAAUGCGCAAAUAGCCCAUCUCCAGUAUUUUUUUUAAUCAUCUCAGUUUUAACAGGCAAUACUAUCCUUCGUUCACAGGUCAUAUGUUUCAUCAGUGUAAAGGUGUAACCAUUUGGGGAUUAGUAGUUCCAUUAUCUUCUUC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
26.63%
ME_num:
MEP:
60.16%
HE_num:
HEP:
13.01%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
flag_leaf
Tau :
0.65
Avg Expression:
5.01
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 2.02987022091156 | 0.000125092136349617 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | 1.654325986288 | 0.00262464532512178 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 2.89049245462058 | 3.25620006245882e-11 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 2.82538827765479 | 1.14045727166175e-07 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 2.59908976022946 | 3.02195922708083e-07 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | 1.86923754017429 | 0.00107940268495311 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | 1.43623109802236 | 0.0108036995370848 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 2.05876086505112 | 3.38453771389298e-05 |
| 9 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | 2.08067673780875 | 0.00407835611572862 |
| 10 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | 1.32715305465051 | 0.0295392482535151 |
| 11 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | -2.00274043634688 | 0.00543014121862659 |