RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

OSA-LNC107279855

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr1

Start:

17959120

End:

17960672

Strand:

+

Ref_name:

LOC107279855

Sequence
(XR_001542443.2):

ACCAUCCCUCAACUGUGGCGGAAAGGGUGUUGUUCCAGCUGGAAGAGUGGGCGAACCUGAGGGAGCAGAAGAACCUCACCAUUCCAAGUCCGGCACAGGGGUGGACGAAGCCACCAAAUGGGUAAAUGCGGACAGGGGCGGAGGGCUCGGUAGGGCGAGGUAUGGCGCUCGCCAUACCUUCUCCUCCCGCCUACCCCCGGGAGUUCAGGUCUGCAGAGUGCGAGACGCAGAGACCGCGACGACCGCGAGACGGCGAUAGAGCGCAGGCUGAACAACGCUGCGACCUUCGAGAUGCCAAAGCCGUGUGCGGCUUGUUUUCUUGUGUAAAUUAGGCUCUUUACCAUGAAACCCUAACCCAAAUUUCUCUAAUCCCCAAUCCCCGAUCCAUCCUCAUCGGCAGAGCAGGCGAGAGGCGGCGCUGCGGGCGACGGCCGACAGGGCGAGCGCCGGCGCUGCGGCGGCGCGGCGAGCCGGCGACGCGAGGCAGCGCGCGGCGGCACGGCUGCGCAGGGCAGCGGCGCGGCGGGCCGGCGGCCAGGCAGGCAGGCAACACCGCGGCAGCAGGAGGCAAGGCAGGCGGCAGGCAGCACCGCAGCAGCCAGCAGGAAGAAGGCAAGCAGUCAGGCAGAAGCAGGCAAGCAGCCAACUAGCCAAGCAAUCAACUUAUCAACCAAAAAAUGGAUAGAAAGAGAAAAGGAAAAGCAUUGGCUUCACAAAGAUAUUUGAAGAGUUACUGAAACCCGGGCACUAGUUGUGCAUCUUAAGCAGAAGAUCAUGGGCCACACCGCCACACCUAAUUUUUUUUCCGUCCUCCGCCACUGAAUGCGGAUGGUGCAUUUUCAUCAAAUAAACAUAAGGGAGCAUCAGGGGUGGACAUGAGGAAUGCUUUGGGAAUUUUGUGGCUGCAACAACUAGUUUUUAUUCACAGGUAGCAAAUGCCACAGACGGAAGUGUUGGCAUGUAGGCAAGCCACAGAACUGACUAUGGAGAAGGGGUGGAUAGAGUGAUAAUUAAAAUAGAUAAUUUGGAGGUGGUGGGGAUGCUAACACAGGUUGGAGUAAACUGUUCUAUGUAUGGGACAAUAAUCCAAAACCUCGAUAGCAGGUUAAAAUCGUUCCGGGAAAUGAAGGUCCAAUUGGUGUGACGAUCAGCAUAUAAAGCUGCUCACUUGAUAGGCAAGGAAGGAUGCGUGAUGGGCGAAACAUCGAAUUGGCUGUCAGUUCCAUUGGCCUACAUCAACCAUAUUUUAAAGGAAGAAUGUAAUUUUGAUAGCUAUAUUCGGUAGUUAUUUUUGUGAGGUCUUACCUAAAAAAAGAAAACUUGGAAGUAAAAAGGUAUAGUUCUUUUAGUUAAAGGCUAAAAAAAUAAAUUCACAACAAAGUUUAAAUGUUCAACAGACUGUUGUUAAAAAUGUCAAAACACAGAGAAGGCCUCUGCAGCUGUUGCUGCUCCCA

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

7

LEP:

1.42%

ME_num:

359

MEP:

72.97%

HE_num:

125

HEP:

25.41%

Type:

HCR (High-Capacity ncRNA)

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

caryopsis

Tau :

0.68

Avg Expression:

10.27

Tip: OSA-LNC107279855 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1IR64 // leaf // ethanol solvent (untreated control)--/--IR64 // leaf // Paclobutrazol (PB)1.942501622820170.045688327505408
2Nipponbare // panicle // AM--/--Nipponbare // panicle // PM-1.067554952205530.0202138898501707