Chr:
Chr1
Start:
14295541
End:
14297886
Strand:
+
Ref_name:
LOC107279846
Sequence
(XR_001542396.2):
UGCAGCGGAGCAAUGAGAGGGGGCGCUGCGGCAGGGACAGCUGCACGGCGCGGCGCGGCGCGGCUCCGACGCGACAGCGACGGCGACGGCACGCUCUCUUCUCCGGCAGUUGUCUCCUCCGGUGGCCACCUUCUCCCCGGCUUUGGGAGGAAGGAAGUCUGAGAGGAUGGUGGUUCAUAUACUGAGUGGAUGAGCAGACAUGUACACGAUGUUGGCUUUUUGCAGGAGCAACAAAUGUUGAUCUUUGAAUCAUUGUAUAUUGCUGAUGUAACCAUUUGGCCUGGGAGUCCUGGUGUGGCAGCUCACAUUUAUUUUUAUAGCUUGACAAUUAUCUCCUAGCUAAUUAUCUCAAGUGAAUCAUGACAUAGUUUUAUCUUUUUUCUUUUUUAUUGUCAAAUUUCACUACUAAGACUGUAUUUAGUUGUCUCCGUAUUGUCAAGUGGCCUCAAGCUUUGUUGGGUGAUGCCUCCUUGCCUUAAACCGAAUACAGGUCUUGAUGAUACUGCAAUAUUUUUGUUUUAAUGAUUAAUCAAUGUUGUUUUCGUGUAAUUGAUGAGGUUACUGCAAUAUUUUUUACUGAAGUGUAAUUUCAUUCAUGUUGCACUUUUCACUUAUACAAAAAUAUCGGUUUGCAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
29.88%
ME_num:
MEP:
63.62%
HE_num:
HEP:
6.3%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
embryo
Tau :
0.71
Avg Expression:
3.10
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | -2.2535445286357 | 9.61055455625118e-07 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | -1.97913432154666 | 3.15587565506008e-06 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -2.03621158139154 | 1.23688498257028e-06 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -1.88356498982784 | 0.000131184144949986 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -1.54182370352555 | 2.72649283339761e-05 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -1.58103787814341 | 1.34451547933248e-05 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -2.00781349652775 | 6.73276799072019e-06 |
| 8 | 9L136 // leaf // control--/--9L136 // leaf // salt | -1.11627752016118 | 0.0301413323302572 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -1.48402382676547 | 4.06624751830345e-05 |