Chr:
Chr1
Start:
1596475
End:
1597634
Strand:
-
Ref_name:
LOC107279845
Sequence
(XR_001542392.2):
CUUGUUUGUUUCUUUGGGUUAAUUGGAACCAUGCCAUUACAACUUCAGCUAUUUGGAAAUAUGCCAUUACAAUUAGCAAAACCGGCUGGGUGCCAUCGCAAUUUCUUCCAAAUUGGAACCAUGCCAUUAUAUACGUCUGAAUUGCCAUCCAUGCCAUUUGUCCUCGCACGUAUUUCCGUAUGGACGCUUGUGCCCCUGGCUGAGACGAUACAAGCCAACCAUCCCGGUCCGGCUCAACCAUCUCUGUUCCCCAUUCCCUAUUCCCCAUUGUCUGCAAACCCUAGCUCGCCGACGGCGAUCUCGACGGCGAUCGGUGCAGCGCCGGCGACGACGACGGGGGCUAGGGAUACGGCGCCGGCGACGACGACGGGGGCUAGGGAUACGGCGGCGGCUUUACCGAUAGCUUCUCCCGGCGUAGACGGAUCAACGCGGCAACGAGUUUGGAGGCGAGCUAUACCAGUGGCAGUGGUCGCUCUGCAAUUUCGAGAAGGUGCAGAGUCCCAUCGGUGGCUCCUUCAAUCCCAGAGCUGAAAUGUGCUUGUGGGCAUGCCGCUGCGGUGCAGACAUCGAACACACCAAGGAAUCCAAGGCGGCGGUGGCUGCAGUGUCCUGGGGAGAAUUGUAGAUGUGCCUUGUGGAUUUGGGAAGAUCUCAACGAAUACGUUGAGGAGAUGGUCGCUUACUGUCAUGCUGACGAGUACGACUAUCUUAGAGAGACAUGCGACAGUUUGCGCCAGUUUAUAGCAGAUCAAAGACAUGCAUAUCUCUCAGUUGUCAGCCUAGGCUGAGGCAAAAGAGUUGCAGUUGCAAGCCAAUUACGAAGCUUUGAAUCAGUCCAAGUUGGGGUGUGCAGACUUAAAGAAGAAAUUGGAGUGCGAGAAGGCUUGGACUCGCACAAUUGUGUCCAUGAUGAUCUUGUUCUAUGUGUUGUUAGUUGCUGUAAUGAUAAGGCAGGUUUAGGAGAUGUUCUGUGUGAUGUCUGGUGUGUGAAAUAUUGUGAUGUACCUUAGGUGUGUGAAAUCUGGUGUGUGUAUUUAUGUUUGUGCAAGUUGGGGAAUGCAAUGCAAGGGCUAUAUUUUGGAAUC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
60.57%
ME_num:
MEP:
32.52%
HE_num:
HEP:
6.71%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
2nd_leaf
Tau :
0.89
Avg Expression:
4.48
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | 1.38446197328669 | 0.000115761107236288 |
| 2 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 1h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 1h50 min" | -2.44258279205609 | 0.00843859434056392 |
| 3 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | -1.49731008566814 | 0.0477209578442103 |
| 4 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | -2.56028033366057 | 1.38785946523943e-07 |
| 5 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | -4.57444370258892 | 0.0326864691082792 |
| 6 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | -1.18063505219995 | 0.0270118996561503 |