Chr:
Chr1
Start:
36684314
End:
36685135
Strand:
+
Ref_name:
LOC107279844
Sequence
(XR_001542391.2):
GCCUGCGUCCACACGGUAAUUUCGUCGAACAUCUUUCGUGCAACAACUUGGGAAACGUUAAACGUGGCAGUUAGGAUGUGGUUUUUACCCAUUGCGUGGUGAGGCGUUGGUGGCGGCCGCGGCCGCGCUCGAUGGGGCGUCGGCCGGUGAGGAGCUCCACGAGGAGGACGCCGAAGGAGUAGACGUCGCUGCGGUCGUGUUGUCAGGCGCUAGCCGUGCGAAGCCGAAAUCGGCCACCUUUGCUCUAAGUUGAUCAGUUAGGAGAAUGUUGGAUGACUUGAUGUCACGGUGGAUGAUUGGAUGGUCUGCAUGCCCAAUUGCACAUUGUUGUGAAAUGCCAUCAGAAAUUAGAACGCUAGCAAUUUGGUAUCAUUUUAGGUACCGAUAGUAGAUAAAUUCUGUGGGUUCUAAUUUUAAUGUGUACAACUUCUCAAAAAAAAUUCUCACCUUGAAUGUGUGCUUAUGUAAUUAAAUAUGGCGAUGACAUGAUUUAUAGGUGUUCAGGGCUUUAACUAUGCAACGCUUUUGAGCUCACAAAGGUGUCAAACAUGAAUGCCAACAUAUUCAUGCUAUACGCAUAGUGCUACUGUUGGUUUAUUCAGGACAAUUGCAGAUUUCCUCUAGGGAAGUCAGCUUCUCAAAAAAAAAGAAGACGUGCUUGUUGAUAAGAGAGAGCUAUGCCUAUGCUAAUUGCAAUAGAGACUUGUUUCAGUUAUAUCAUGUAAAAAUUGUGUGGUCUA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
2.85%
ME_num:
MEP:
85.37%
HE_num:
HEP:
11.59%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
embryo
Tau :
0.48
Avg Expression:
4.33
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 1.18430741991073 | 0.00810271832774495 |
| 2 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 3.5h | -2.58010921087456 | 0.00103186899625779 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 1.24305728844262 | 0.00242358961061772 |
| 4 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | -1.66476532343084 | 0.00100819433092612 |