Chr:
Chr1
Start:
3431587
End:
3432472
Strand:
+
Ref_name:
LOC107279810
Sequence
(XR_001542342.2):
AUAGGCCCUUCAAUUAAUUUCAUAAUAUUGCUAGAGAGCGCGGGCCGAUGGUUGAGCCGUCCAAGAGCGGCGGCGGCGCGGCGCUCCGGCGAGCGGCGGCCGGAGUCGCUCUCCCGGUUGGCGUUGUGUAUGUGAUAGAAGGCCAGGAACCCGCGCCAUUGCUCUUCUCAACAGGAGCAGGUGAGAUCUCUGACCUGUCAACGGCAAGGUCGUCUUCCUCGUCAUGGACCUUCUCUCCCUCCCAUGGCGUCGCCCACCUCCGAGGUCUGUACACUCCAUAAACCAACCUCUCCUCCUCCCAUAACGCAGCGUUGCCGGAUCUACGCCCUCCAGAGUCUGAACCCCUCCGAAUCCUCUCCGUUGCGUGUCUCUGGGGCUCAGAUUUUCUUACUGAAGAAAUAACAGAAGCAAUCGAUGGAAUAACUCAACAACAUCUCAGGUGUGCUCCGAACCUCACUGCCAAAGCAAAAUUCUAUUGUUUUCACUAGUAAGCAAGUGUUACCUAUAAAUCACACAUGCCAACUCGUUGAUUCAGAACAUCACUAGUAUGUAAUGUAAACUCUGUAUAUCAGUAUAUGAUGUGUGCAUCCUACUGGCUUGUGUAACUCUAAAGUAAAUAAAUAUAACACCAUUAUCACCCAUACUUACAGUGAUUCAAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
1.63%
ME_num:
MEP:
25.61%
HE_num:
HEP:
72.56%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
anther
Tau :
0.62
Avg Expression:
16.26
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 1.58002751965977 | 0.00343049415428043 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | 1.46377051402711 | 0.00292583852406866 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 1.86983728748844 | 0.000121962769638163 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 2.57930154020307 | 1.75723907504273e-07 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 2.27776811634974 | 1.36424398224021e-06 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | 1.68375141420527 | 0.0010798292026849 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | 1.67122420661157 | 0.00025778783347925 |
| 8 | Nipponbare // leaf // H2O_control--/--Nipponbare // leaf // Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 4.57844554530916 | 1.25531814488695e-68 |
| 9 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -1.00030470742223 | 0.00193797465843707 |
| 10 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 1.48069889237181 | 0.00189578762237947 |
| 11 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 1.59912681054589 | 0.000289548931150292 |
| 12 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | -1.10389720932365 | 1.85415958721036e-05 |
| 13 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | -1.24157067346075 | 2.80788068339047e-07 |
| 14 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | 1.26478992743524 | 0.0186493144965836 |