Chr:
Chr12
Start:
14754305
End:
14758009
Strand:
-
Ref_name:
LOC107279806
Sequence
(XR_001542316.2):
ACCCCAGCCGCCAGCUAGCCGAAACCCUAGCUUCUCCACUCUCUCUCUCUAUCUUUCGCGCGCGUGGCUGCGUUGACGGCCCAUGCAUCGCCGCGCCGUCGCACUGCCGCUGCGCCUCGCGCCGCCGCAUCAUGGCCGGCGCGCCAUGGCCGGUGACCUCGCGCUGUGGCGCGCCCACUUUUCUGUUCUCCUCCCACCGUCUCUAAUCCUCCACCUGUGAAGUGAAGGAGAGAGAGAGAGCGGCGAUGCGCCGCCACGGGCCACCUCGCCGGCGCGCGCGUGCACCUGCGGGUGCGCACACGGCCAUCGAGAGGCUCCUUGGCGGUGCCCUGUGCCCUCCCCCUUUCACCCCUUUGCCGGCGUCAACGUUCGGCCGGCGACAAGGUCAUGGGACAAUGUCACUUGGUUCACAGAACGACUAAAAGUUAGACACGAUUGCAUAUUUUUUCUAACAAUUCAUACUAUGUAUACUUUAAUUGUGUAAUUCAAAAUCCUUUUUAUGGACCUUUGAUACAUACAUACAUACACUCACACAUAUGUAUAUAAUAUGUAAGCAAAUGAAUUAUCCACAUAGCUGUGUGGCUAGUUAGCUAGCAUAUCUUGGAAUUAUAUUUAUACUUUUUCAUCUGCUUGUUUAUUUUUUAACUAUGUAAUAUAAUUCCUAUGUGCGGAGCAAUUGUAACAGCUGAAGUGCCAUAGACUAAAGUUUAUGAUUGUGGUUUGAAUUA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
46.34%
ME_num:
MEP:
1.22%
HE_num:
HEP:
52.24%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
caryopsis
Tau :
0.83
Avg Expression:
56.49
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
Num. | Condition | log2(FoldChange) | Padj |
---|---|---|---|
1 | Caidao // leaf // none (control)--/--Caidao // leaf // 0.5% Na2CO3 solution for 36h | -10.0716825092831 | 4.57827557906536e-12 |
2 | WD20342 // leaf // none (control)--/--WD20342 // leaf // 0.5% Na2CO3 solution for 36h | -9.92700442577507 | 1.68580769629901e-12 |