Chr:
Chr12
Start:
20857107
End:
20859180
Strand:
+
Ref_name:
LOC107279802
Sequence
(XR_001542235.2):
AGCCCGUCCUAUUUCCCCCACACCGAGCCUUUAGCUCCAUCUCUUUCUCUCUCUCCUCCCAUGUCCGGCCGUCGCCGCCGACGGUCGAUCUCCUCCAUCAUAGUUUCUCUAUCCCUUUCCUCGCGCCACCAUGUUGGCCUCCCUCCGGCGAACUCAUUUUGCCCAUCUCCCCCUUCUCUCCCACCUCACUUUAAGCCAUCACCGAGCUCUCUCUUUCCUGCCGGGCCGAGCUCUUGUCACCGGUGUUCCCAUCUAAUCCUUCCUCUCCUGCAGUGGAAAUCGCGUCCUACUGGUGCACCACAUCCGGGAACACGCGUGACCGCCGGUGUCGCCGCAUCCCGACCACCGGAGGGCCGGCGCCCCUCCUCCCCGUCCUCUCUGUUUGCCCGUGGUGGAAGAGAAGAAGAAGGAAGAGACGGGAGGAAGAAGAAGAGAGAGAAAAAGAAAAGGGAAAAAGACUGACAGUUUUUAUAGGAAUAGAAGGCCCAACAAGACUCUCUAGUUUGAGAUGUUUUGAGUGUGGCGAGAAGGAGCAUUCUGCCUAAAGUGUCAUUCCAAGGAAGAUGAAGGGGACAAAUCAUUAAAGAAGAGUAAGAGUGGAAGCCACAAGCUCAUGAAGAAACCCGAGAAAGAAUGAAAGAAUAUUGAGGCUUUCAUUGGACAAUGAGAUUUAAAUGAAGAGAGCUCCGGUUCUCUAUCCGUCUCCGACGCUGAUGAGAGUGAUGAUGAUGGAUAAUCUUAAUGGGUUUCGCUGGUUUUACAUAGGUACCAUGCAUGGUACAUAUUAAUGGUCAAAGUUGAAUCUUGAAGGCGAAAGUUUCUUGUUUGAUAAUUCAUACGAAUUAGUUUCACAUUCCACGGAAAAUAUGAAAUUUCUCGGUCCUCAUUCUACAGCUUAUUGCUUAGAAUCUUCA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
67.07%
ME_num:
MEP:
20.53%
HE_num:
HEP:
12.2%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
carpel
Tau :
0.93
Avg Expression:
20.52
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | -4.81291332232667 | 1.49558514066601e-66 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | -3.10212613244112 | 4.49660584282601e-62 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -9.45211788501335 | 2.03865372836407e-19 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -10.3088060515898 | 4.24324562937848e-17 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -10.556503860696 | 3.21697890640354e-18 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -9.76145179462583 | 9.26695159583789e-16 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -5.20903564413185 | 3.91984163622263e-83 |
| 8 | Nipponbare // leaf // H2O_control--/--Nipponbare // leaf // Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 3.48347202125029 | 4.66112788122651e-05 |
| 9 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 1h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 1h50 min" | 8.04152350576048 | 6.31422518053543e-37 |
| 10 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS256 | 3.3696807083061 | 6.98738389030521e-06 |
| 11 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS279 | 4.04293777776555 | 9.91916899713205e-09 |
| 12 | WD20342 // leaf // none (control)--/--WD20342 // leaf // 0.5% Na2CO3 solution for 36h | -2.00966999430395 | 0.0376161517869477 |
| 13 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | 7.96349266981971 | 1.00680435062899e-06 |
| 14 | 9311 // leaf // control--/--9311 // leaf // salt | 8.72956373916586 | 1.17547698818116e-11 |
| 15 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -9.3473601300777 | 2.12395449738025e-20 |
| 16 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -7.15755499000754 | 1.59683254650993e-58 |
| 17 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_L8 | 3.86154847578945 | 8.59227871611841e-05 |
| 18 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12 | 3.9607891236226 | 3.76511788808798e-09 |
| 19 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_RS105 | 2.81249960208519 | 0.00836131944020153 |
| 20 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7341 | 3.70554375783012 | 0.0380990269464014 |
| 21 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7331 | 3.3334466486719 | 0.00113194112452717 |
| 22 | Nipponbare // leaf // "wild_type,control,2"--/--Nipponbare // leaf // "wild_type,drought,2" | 7.2534239849401 | 5.90209363643968e-05 |
| 23 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7342 | 3.9905754622335 | 3.21642339367619e-09 |
| 24 | Nipponbare // leaf // control--/--Nipponbare // leaf // drought | 7.25334853557195 | 5.96538290580999e-05 |
| 25 | Nipponbare // leaf // "wild_type,control,1"--/--Nipponbare // leaf // "wild_type,drought,1" | 7.25322917111381 | 5.92247985577312e-05 |
| 26 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | 7.46788446450877 | 8.43970580677095e-09 |
| 27 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | -4.15490190277518 | 0.0103274798958317 |
| 28 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -7.85207401303167 | 4.99044003870853e-31 |
| 29 | 9L136 // leaf // control--/--9L136 // leaf // salt | 5.59104586755291 | 1.97074378058718e-18 |
| 30 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | 5.06551713440915 | 1.71039827858888e-13 |
| 31 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -8.56201777149246 | 7.64075992766613e-38 |