RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

OSA-LNC107279794

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr12

Start:

857117

End:

857807

Strand:

-

Ref_name:

LOC107279794

Sequence
(XR_001542215.2):

GUUCUGUCUUUAUGAAAACCCGUUUGAUUCGAUUUAGUCUCUCAUCAUCUCCUUCAAAGCUUGCAGUGCUAAUAGCUGUCACAGGCCAUGGACGCAUCAGCAUUGAAGCGAGUACUGAUUCCUGACCAGAUAAAAACAGGAAUUAGCCAUAAUGUAUUAUGAUAAUACCAGGCUCAGAUUGCGUUGACAAAAUCAGUAAUUAUGUUUUUGAGGCACAUUGCCCAGUGCCACCUAUGCUGAGACUCUGUUGGGAUAAUCUCUCUCUCUGGAAUUCUGGUCUCAGGGCAGCAGUUGUUGGAGGAUCAUCUGCUCCUGUGCCGAAUAUCAAAUUGAUCUCAUUCUCAGGCAAUGUUGGUAAACCCUGUUAAACAUUAUUAUUCAGAGGUUGCCUUUAGUUAUACAUAUGAGCUUAUAAUUAUGAUAUGCGAUUGAAAAUAACAGAAUAUUGAACAAAGAAACACAAAAAUUAUGCUUAUGAA

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

411

LEP:

83.54%

ME_num:

76

MEP:

15.45%

HE_num:

4

HEP:

0.81%

Type:

HCR (High-Capacity ncRNA)

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

anther

Tau :

0.97

Avg Expression:

8.19

Tip: OSA-LNC107279794 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA-2.136743693236920.0446540561763446
2Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA-3.810872158448870.00213512858275932