Chr:
Chr12
Start:
854185
End:
856297
Strand:
-
Ref_name:
LOC107279793
Sequence
(XR_001542212.2):
UUCUAGCAUGUGAAAUGGCUGAAAAUAUGUUAUAUGAUGCAAGAAAUAGCUUGUGGGCCAGCUUGUUUUUCUCCCUGCAUUGCGCUUGGUGUUUGGCCUUUUUCCCUGAUGGACAAACUAACUUAUCGGAGGAGGUCCUGUUAAUGUACACUGAUUUGAGCGUAAGGCGGAAGAAAAACACUAGACCCUUGUUGAUUUGCUUGGAGAGAAGCGUCUUCUAGCUUGGAAUGUGAAUAUGCAUGGUGCGGUCACAGCGACUUGAGGAUGAGGUUGAAGAGAAGCUCCGGCGCGGAAAAGAAGGGGCUGUGGUCGGUGUCCAUGACCAUCACCUUGCUUGGCGGCCACCGGCGGAUCAUUGCCUCCUGUUGCUCCGGCUGCACCAUCCGGUCGUUCUCCGUCUUUAUGUAGACGCGGCGGACCCUGUCGAUGAAGCUCUCAACUCCUCCAUCGUCGCCGGUGAAUCUGGCCGUGCUGAGCGCCGUUGGCCAUGGCCGGAGUAGAAUGGAAGCUAGUGCAGAGUCCUGAAGAAACACUGUAGGCGGAUGAUCAGCUCCUAGACCAAAUGUCAGGUCAUACACAUCUCCAUGCUCGGAUAAAUCAGUUUGGUAGCCGAACUGAAGCAUGGUUGCUGCGAUGAAGAUUGCCUGCUUAAUUCUGUCCCCAAACAAAUGCAUUGCAUGGACAACGCUUAGACCUCCUGCACUAUGUCCAAUCAAAAUUACCUGACAAACAAGAGAACUGUGCAUCAGUGAACCAUAAUCUGAAUCACCUACCUUGUCGCCGGCCGGUAAGCUGGCCAUGAGGUCAAGGAGCGGCGCGUUGUAGUCGUCGAAGGAGCGGACGUGGUUGGGAUCGACGAGGCUGCCGGCCGCGCCGGCGAGGUCGACGG
Sequence
(XR_001542213.2):
AGCACAAAGUGCUCCCUUGCCAUGCUCAUUCGGGCUCUGUGUUUGGAGGCCAAUUACUGAAGGAUGGAGGGGGAUUAUUUGAUUGAUAUCCUCCAGGACAACUACAUUUGCGCUGUCAAUUCCAAAUGCCAAACCAAGCAGCUUGUGGGCCAGCUUGUUUUUCUCCCUGCAUUGCGCUUGGUGUUUGGCCUUUUUCCCUGAUGGACAAACUAACUUAUCGGAGGAGGUCCUGUUAAUGUACACUGAUUUGAGCGUAAGGCGGAAGAAAAACACUAGACCCUUGUUGAUUUGCUUGGAGAGAAGCGUCUUCUAGCUUGGAAUGUGAAUAUGCAUGGUGCGGUCACAGCGACUUGAGGAUGAGGUUGAAGAGAAGCUCCGGCGCGGAAAAGAAGGGGCUGUGGUCGGUGUCCAUGACCAUCACCUUGCUUGGCGGCCACCGGCGGAUCAUUGCCUCCUGUUGCUCCGGCUGCACCAUCCGGUCGUUCUCCGUCUUUAUGUAGACGCGGCGGACCCUGUCGAUGAAGCUCUCAACUCCUCCAUCGUCGCCGGUGAAUCUGGCCGUGCUGAGCGCCGUUGGCCAUGGCCGGAGUAGAAUGGAAGCUAGUGCAGAGUCCUGAAGAAACACUGUAGGCGGAUGAUCAGCUCCUAGACCAAAUGUCAGGUCAUACACAUCUCCAUGCUCGGAUAAAUCAGUUUGGUAGCCGAACUGAAGCAUGGUUGCUGCGAUGAAGAUUGCCUGCUUAAUUCUGUCCCCAAACAAAUGCAUUGCAUGGACAACGCUUAGACCUCCUGCACUAUGUCCAAUCAAAAUUACCUGACAAACAAGAGAACUGUGCAUCAGUGAACCAUAAUCUGAAUCACCUACCUUGUCGCCGGCCGGUAAGCUGGCCAUGAGGUCAAGGAGCGGCGCGUUGUAGUCGUCGAAGGAGCGGACGUGGUUGGGAUCGACGAGGCUGCCGGCCGCGCCGGCGAGGUCGACGG
Sequence
(XR_003239956.1):
UUCUAGCAUGUGAAAUGGCUGAAAAUAUGUUAUAUGAUGCAAGAAAUAGCUUGUGGGCCAGCUUGUUUUUCUCCCUGCAUUGCGCUUGGUGUUUGGCCUUUUUCCCUGAUGGACAAACUAACUUAUCGGAGGAGGUCCUGUUAAUGUACACUGAUUUGAGCGUAAGGCGGAAGAAAAACACUAGACCCUUGUUGAUUUGCUUGGAGAGAAGCGUCUUCUAGCUUGGAAUGUGAAUAUGCAUGGUGCGGUCACAGCGACUUGAGGAUGAGGUUGAAGAGAAGCUCCGGCGCGGAAAAGAAGGGGCUGUGGUCGGUGUCCAUGACCAUCACCUUGCUUGGCGGCCACCGGCGGAUCAUUGCCUCCUGUUGCUCCGGCUGCACCAUCCGGUCGUUCUCCGUCUUUAUGUAGACGCGGCGGACCCUGUCGAUGAAGCUCUCAACUCCUCCAUCGUCGCCGGUGAAUCUGGCCGUGCUGAGCGCCGUUGGCCAUGGCCGGAGUAGAAUGGAAGCUAGUGCAGAGUCCUGAAGAAACACUGUAGGCGGAUGAUCAGCUCCUAGACCAAAUGUCAGGUCAUACACAUCUCCAUGCUCGGAUAAAUCAGUUUGGUAGCCGAACUGAAGCAUGGUUGCUGCGAUGAAGAUUGCCUGCUUAAUUCUGUCCCCAAACAAAUGCAUUGCAUGGACAACGCUUAGACCUCCUGCACUAUGUCCAAUCAAAAUUACCUGACAAACAAGAGAACUGUGCAUCAGGUUAAAUGGUUGACCACUGACGUAAAACAUAUUUAUCUGAAGUUGGACUUUGAGUAAAAGAUGUUGAUGGAACAGUGAACCAUAAUCUGAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
65.85%
ME_num:
MEP:
33.74%
HE_num:
HEP:
0.2%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
anther
Tau :
0.86
Avg Expression:
3.11
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -2.49221430670998 | 0.019065431897613 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -1.75194970537918 | 0.0468492755521711 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -1.88260438398587 | 0.0259938230536716 |