Chr:
Chr12
Start:
688941
End:
690372
Strand:
+
Ref_name:
LOC107279791
Sequence
(XR_001542208.2):
GUCGAUACCAGAGCGCGAUACCUGCCAGAUAUCAUGUGUUUCCUACUAGGCAUCAGGAGCCGGUCACCGAGACGUUGUCACUGCUAGCCUUGUCCUCCACAUCGAGCCCGUCCUCCACUGUCUAAGCCCCAUGCUGGGGCUCGAUGCCGGCGACCGCGUCCUCUGUUGUCACGCCCCACGCCAGGGCUGGUCGCCGGUGGCUGCGUCUUCCCACGCCCCACGCCGAGGCUCGUUAGUCCCAUGCCGGAACUCAUCACCCGUGGUGCUGCAUAUCUUCUCCGGUGAUGUGCUCCCCGACGAAGCAGUGAGGCGAGGCAGCGGGGGCCUUCUCCAGUGAGCUCCCUUCUCUCCCUUCUUCCUCCGCUGCCGCAUGCCCGAUGCCAGUGCUGCUCCGUUGCCGCAUGCCUGCGCUGCUCCGUUGCCGCAUGCCUACGCUUGUGCUCUAGGGAAUGAGGGAGACGAUACCGUCGCGGGUGCUAGGCGCGGGAUACCAGUAUCUAGCUUUUCCAAAUUGCUAAUCUGAAAAUACUAUAGAACAGUCUCCCGUCCGAACAUGCAUGUGACUAAAUAAUCAUCUACUUAAACAUCUUAUCCAUGUCAGUAUACCACGUAUUUGGUCUUAUCCUAUCCCUGUAUUUCUUCUUCCCCUCCCCCCCUCUCUCCAUCUCCCUCCCUCCCUCUCUCCCCCCCUUCCCCCUCUCACCCUCAUGGCUCAUGGGCGGUGAGCACCAUGUGGUCAUCAGUCCGUGUGGUCAACAACGACUUGUGUGCUGUUGUGGAAAACCAACUCAACUCGAGGUGAAGAAAUCGCAGGGGCCAUUCUUGAGGCUUUUUUGAGACUGUAGCAGUCCUCUUGCUAAUUACGCGUGCGCAAGAGAGGGACGGGCGCCGGCGCUGCGCAGGAAAUUUUACAUAACGCCCAAAAAUGGAUGAGUGGCUGCCGACGCCAUAUAUCACACACAAGUUGUAUUUUUCUAAGCUUUUAUUAUAUCAAAAUAGUAAAGUUUUUGAACAUAUAUGAUCACGUAAAAGAGCAAUCGUCCAUCA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
69.92%
ME_num:
MEP:
26.22%
HE_num:
HEP:
3.66%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
callus
Tau :
0.90
Avg Expression:
5.24
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 1.75426236543942 | 0.000222222625088979 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 3.08136593130958 | 2.25678555293747e-13 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | 1.68119584701092 | 0.00213939061705613 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 1.15324764066071 | 0.0241070177600813 |
| 5 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | 6.40187128144159 | 5.29041371110139e-39 |
| 6 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | 3.26034673023974 | 4.63622207669966e-13 |
| 7 | 9L136 // leaf // control--/--9L136 // leaf // salt | 2.43219008465319 | 9.49050224891354e-05 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -3.09844711762122 | 0.000407960457952727 |