Chr:
Chr12
Start:
1567010
End:
1567900
Strand:
+
Ref_name:
LOC107279781
Sequence
(XR_001542131.2):
UAAUAAAUUUAGUAUCUAUGUAAGAGAAUUCCUCUGUGCUAUAAAGCCUAGAUGUACAAGGUACACUUUUACAUCUACAAAGACAAGUUUGUAUACAAAGAAGGCGAGAAUAUGAAGACAAUCUUGAGCUACUUCGUUUUCUUUUUAGUCAUACUACAAAUUUCCCAUCGUUUGGUAGCUGGUCAGAAUUAUGAAUUUCAAUCAGGGAUAAAUCAUGGAUUUGUGAACUCAAGAAAGAAUCUUU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
93.9%
ME_num:
MEP:
3.66%
HE_num:
HEP:
2.24%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
carpel
Tau :
0.98
Avg Expression:
67.43
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Nipponbare // root // "mock,14_days"--/--Nipponbare // root // "auxin(50CM_2,4_D),14_days" | -7.15971261404788 | 0.00102072676607454 |
| 2 | 9311 // leaf // control--/--9311 // leaf // salt | -2.22873439800189 | 0.000233453215298635 |
| 3 | 9L136 // leaf // control--/--9L136 // leaf // salt | -6.00634287521606 | 3.45147320521778e-05 |