Chr:
Chr12
Start:
20332951
End:
20334998
Strand:
+
Ref_name:
LOC107279743
Sequence
(XR_003240121.1):
GCCAACAGGUGGGGCCCACCAGUCGGUCGUCUUCCUCCUCUAGCCAUUGGGGCCGGAGCUCCAACCGCCCCAGCGCCGCCGCCUUCUCCGCUCCAUGUCGGGCCUCCACUCCGCGCCCGCACCUCGCACCCACGUCGCCGCCCUCUCCCCCGCCUCUCCCGCUCUCGCGCGCGCGCUCGCAAGGGGCAGAUUCAAUUUUAAAUCCCCCCUCCCUCUCUCUCUCCACCUCCCACGCCGCCGGCAAAAUAGGGAGCACCCCGGCGCACGUUCGCCACUCCCAAGCCUCAAUAAAGCUCCCCCGCACUCCCCUCCACCUUUUUCCUCUUUCCGCCGCUCGUUCCCGUGCCCUCUAUUGUUCUCACGCCGCUACACCCACCGCCGCCGCCUUUUCCACUCCUCCGGCUGCCGCUCGCCGCCGCUAGCGCCGCCGCCGAGCCGCACCGUCGUCAUCUUCGGGUUCGCACGGCCGAGGGCUACCUCGUCCACCCCUCCUCCAUCGAAUUCCGCCAUCGAAGGCCAUCGUUCGUCGUGUGCCGGGUGUCCUGGAGCUCAGCCGCCGUUCGACGUCGCCCUCCGGUCACUCACCGUCGCCGUUCGUCGUCGUCUCCUCCCGCGUCGCCGGCCGAACACCGAUUUCGCCCGUUUCGUCGAUUCGCGGUUUCUCGAAGACGUUGCUGUGGUUCCAUCAGUGCGAGAGCAAGGCAAGUCAUGCUUUACAUUUGAUCAUAUUGUACCCAAUUUACAAACACCCUGCAUUUCUAUCAAAUGUUGCACUCUUUUACAAUGUCAUGUGGGAUGGGUCCUAUUACUCAGCCAUACAUUGUUUACCUUAUGCCAUUGAUAACUUGGGUAUUAAAAUGACUAGAUAUUAGUUUAGGAGAUGCUUAGCCAUGCUUAGUUCAACUAGUGCACAAAAGGGGAUCUCAUUAAAGCAUAGACUUUGAUUAUUGGCAAUAGCUUUGGAUUAGUGGCACCGUAAUGGUGUUGGCUUAUUAAAAUUCACUACAUGGUGGGCUGUGGGUGCAUGGUUUUAUUGGUCGCACCCAUGGCAGUUAAGGACCGGUUCGCGGGAUGCCCUGGAAGAACUUAUCGUACUUACGACAAGCUAGCGUGGGCAACGACUGGGCUUGUAGUGUAGCUUUUCUCUAGCCGACGUACCCAGGCGAGGGUGGGCGUGAUGGAGUUGGGUCGGCCGGGGUGUCCGGUUGAUCGGCUUCCGGAUUCACUGCGGCAUGAAAGGGGGGCCGCCCGUUGCCUGCUGGGGGCGGGGGCGAACCCUAAGGUGUGGUGCGAUCGGUUAUAGGGGGUUAUGCGAAGGGUCCUGUCACGGCCUCUUUCCGGUAUGUCGUGGUGGCAUGUCGGCG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
90.24%
ME_num:
MEP:
8.94%
HE_num:
HEP:
0.61%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.98
Avg Expression:
1.78
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
Num. | Condition | log2(FoldChange) | Padj |
---|---|---|---|
1 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | -2.41371877217416 | 0.0409486184921819 |