OSA-LNC107279722


Function Link


Basic Info

Chr:

Chr12

Start:

9165534

End:

9167558

Strand:

+

Ref_name:

LOC107279722

Sequence
(XR_001542010.2):

CCCCCACCGCAUCGCCUUCCACACCGGACCCCACGGCUAUUUGCCUCCCCCCAGCCUCAUCGCCUAUUCGCCUCCUCCCUGGCCCUGGCAACAAUGACGACGGCGGCGACGGACUCUGUCGAUGACGACAGUGACAGCGGCGGUCGCGGACGAGUGUGGCGACAAGGGCAGCAGCGGCGGCGGAGGUCACGGACGAGGACGACGGCGAUCGAGGGCAGCGGCGGACACGGAAGAGGGAGGCAGCAGCAUUUGAGGGCGGCAGUGGACGCGGACGAGGGCAGCAGCGUUGGUCACGGCGAACGAGGGCUACAGCGCCGGUCUUAGGCAUAUUUGGUACUAAUAUGUUCUGUGAUUUAUCUGUUUUGCAGCUCUGAUGUGUAGAUGAGUAGCAUAUGACUCUCCGUCGCAAAUCGAUAAUGCCUAUUGCCUGUGAUUCUCCCGCAUGUCUAGCCGAAUAAUUGCAUCCUUCCUCACAAGCAUGGUGCAGCGCCACCAAGUCUCUCUCUCCAAAUCCAGGAAACUGCAAGGCAUCAACUGUGGCAAUUAAAUCAAUUAUCAAUUCCAUCAGCACACUUGAGUUUUCUCAGAAAUCGAUUUCUUCAACCUGCAUCCGGUUCCUGGCCACAGAUGUCUUCUCACAGUGUUUGGAGCAUCCGCAGAUUUGGUUCAUUGGUUUCGUUCAAGCUUCACUCUUUCAUUGUACUGUUAGGUGAUGUUUGAUGUUCUCUUUCAUGCUAUAUCUUGCAUUCCUACUUUCCCGUGGAUUUUAUAGCACUUACCUCUAAAUUUCGCCUUCAAUUUUCAGUUUUAUUUUUUUCUCGAAAACACUGGAGAGCUGCAUUUCAUUUCAUUUCAGUUUUAUUUUCUGUGAUGAGGUUUUUUUUUUCUUUAAUGCAAAGGUGAUUUAUCAAACUUUCAGAACUGCAAUAUGCUAUUCUCUGUUUAAUUCUUAUUAUCGGAAUAUACCAUAUUAUGCCAGUGUCAAUCAUAUCAAGCACUUUUAAUAUUAUGCCAGGGGCAAUCAUAUCAAGCACUUUUAAUCAAAGAACAAAUGAACGCAAUUCUCAGCAGCGUACAGUACCAGGCUUGAAUAUGAUCUGCUAAUUACACAAUAUCCAUUGCCUCCACGGUUUGAAACUAUCUGCUCACACUUCUAUGAACCCCGCAAUGCUCCUUUACUAAUCAAGUAAUCACUCCAGUUGGUAGCUAGAUUAGGGUUUGUACGAUACUUAAAAGGAGUUCAGAAGCAGCACACCACUUAAACAGGUAAAUAUACAGCAGUUUUUUUAUUAGAGAUUCAUUAAUUGUUGGAAAUUAAGAUGUUCAGGAAAUCACACAUUCACACUUGACAAGUUGAUAGCUACUUCUAGCUAUACAAAUGCACUAUCGCUGAAUUGAGAUCUGCUAUUUUCAAUGAAGAACUCCCAUUAUUCGCACCAGACUACAUGUAUAUAUUUGUACAACAUUCAUAUUGCCCUUCU

Sequence
(XR_001542011.2):

CCCCCCACCGCAUCGCCUUCCACACCGGACCCCACGGCUAUUUGCCUCCCCCCAGCCUCAUCGCCUAUUCGCCUCCUCCCUGGCCCUGGCAACAAUGACGACGGCGGCGACGGACUCUGUCGAUGACGACAGUGACAGCGGCGGUCGCGGACGAGUGUGGCGACAAGGGCAGCAGCGGCGGCGGAGGUCACGGACGAGGACGACGGCGAUCGAGGGCAGCGGCGGACACGGAAGAGGGAGGCAGCAGCAUUUGAGGGCGGCAGUGGACGCGGACGAGGGCAGCAGCGUUGGUCACGGCGAACGAGGGCUACAGCGCCGGUCUUAGGCAUAUUUGCCGAAUAAUUGCAUCCUUCCUCACAAGCAUGGUGCAGCGCCACCAAGUCUCUCUCUCCAAAUCCAGGAAACUGCAAGGCAUCAACUGUGGCAAUUAAAUCAAUUAUCAAUUCCAUCAGCACACUUGAGUUUUCUCAGAAAUCGAUUUCUUCAACCUGCAUCCGGUUCCUGGCCACAGAUGUCUUCUCACAGUGUUUGGAGCAUCCGCAGAUUUGGUUCAUUGGUUUCGUUCAAGCUUCACUCUUUCAUUGUACUGUUAGGUGAUGUUUGAUGUUCUCUUUCAUGCUAUAUCUUGCAUUCCUACUUUCCCGUGGAUUUUAUAGCACUUACCUCUAAAUUUCGCCUUCAAUUUUCAGUUUUAUUUUUUUCUCGAAAACACUGGAGAGCUGCAUUUCAUUUCAUUUCAGUUUUAUUUUCUGUGAUGAGGUUUUUUUUUUCUUUAAUGCAAAGGUGAUUUAUCAAACUUUCAGAACUGCAAUAUGCUAUUCUCUGUUUAAUUCUUAUUAUCGGAAUAUACCAUAUUAUGCCAGUGUCAAUCAUAUCAAGCACUUUUAAUAUUAUGCCAGGGGCAAUCAUAUCAAGCACUUUUAAUCAAAGAACAAAUGAACGCAAUUCUCAGCAGCGUACAGUACCAGGCUUGAAUAUGAUCUGCUAAUUACACAAUAUCCAUUGCCUCCACGGUUUGAAACUAUCUGCUCACACUUCUAUGAACCCCGCAAUGCUCCUUUACUAAUCAAGUAAUCACUCCAGUUGGUAGCUAGAUUAGGGUUUGUACGAUACUUAAAAGGAGUUCAGAAGCAGCACACCACUUAAACAGGUAAAUAUACAGCAGUUUUUUUAUUAGAGAUUCAUUAAUUGUUGGAAAUUAAGAUGUUCAGGAAAUCACACAUUCACACUUGACAAGUUGAUAGCUACUUCUAGCUAUACAAAUGCACUAUCGCUGAAUUGAGAUCUGCUAUUUUCAAUGAAGAACUCCCAUUAUUCGCACCAGACUACAUGUAUAUAUUUGUACAACAUUCAUAUUGCCCUUCU


Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

427

LEP:

86.79%

ME_num:

58

MEP:

11.79%

HE_num:

6

HEP:

1.22%

Type:

HCR (High-Capacity ncRNA)


Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

shoot

Tau :

0.93

Avg Expression:

1.18

Tip: OSA-LNC107279722 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Caidao // leaf // none (control)--/--Caidao // leaf // 0.5% Na2CO3 solution for 36h5.866913660573420.0239378456080778