Chr:
Chr12
Start:
19959670
End:
19960930
Strand:
+
Ref_name:
LOC107279677
Sequence
(XR_003239817.1):
ACUUGGGGGGAGGGGGCCAGCUGGCGCACGCGUUGCCGCGCCAAUUUGCCACACCCGAGCGGAGCACCCCGUCGGAUCCGUACGUAAUACACGCGUCGUCCAUCGAGAGCGGUGCUGCAGAGGUGGCGUGCUGCCGCUGGGAUGCAUCAAUUUUUUUUAUUUACAUUUUGAGGCUUUUCUUUUCAUCGUCCGCUCUGUUCCAUUCGCCGCCGUCCUCCAUUCCGUUCUUCCUCAGCUCCCGUCGGUGGUGCUUGAAAGAGUCCGUUUUGGUGCUGGCCUUCUUCAGGUCGUCAAGUUCGCCUUGGCGCGCGGUGCUUCUCUUCUUCAUCGUCAGGUCGUCAAGUUCAUCUUUGUGGUACGUGUUUCUCUUCUUCAGGCCGUCAAGUGUGUCUUAGUGGAAGUUCAAGUUCGUCUUGGUGGUUCUCUGCUCUUUUCCGGUCAUCUUGGUGUCUCGUUCCGAGAGUUCUCGGUGGUCGUGUGUCGUGAAGCGUCAGGUCCCAUUGUUGGAACUUGGAAGCUCCUUGAAGAAGAACGUGUCCCGGUUUUGAGGUAGAAGAAACAAAAGCUAAGCCUGCAAAACAUGGCGGCGAGGGUGAGCUGGGAAAUGGCCGCCCGGCGUCGGCGUGUGGCGGAGGAUAUUGCUCCGCCCUACGCCGUGCUGUUGUUCGUCUUGCUGUUGGCGUGCUGCGUGCGGCGCCGCCGCCUCCUCCUCAUGCCGGAGGAUUUAUUCCGGAUCGGUAACCAAUUUACUGGUAUAAUAAAACAUCCGGAUUAGUUCCACAACUCUUAACUAGUGGAUUGAUUCUCGGUCUAUUAUUGUCCAUAUCAUGCGGUCCGGAAUAAAUCCCGAUCUCUCGUUGUAUCUAUAAUAAAUUUCUUACUAUUCUUGUCACUCCUAGCCAGGAUUGAAUCAUCAUGUAACCGAACAAGUCCUAAGGUGGUCGUCUCCUUUUUAGGCGGAGAGGGAUGACACAUAUCUGGUUUUGCCACAAAGUGCCUCAGUUUUGUAAGUUGAGGGAUGACACAUAUUUUUUCGGUUCUGGAUAAUUUUGUAAUUUGGAAACAAGAU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
91.06%
ME_num:
MEP:
7.52%
HE_num:
HEP:
1.22%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.98
Avg Expression:
1.94
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | -5.06982163905984 | 0.00771444211441703 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -5.3184184724648 | 0.00421345691535142 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -4.56941950411933 | 0.0202926420392904 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -4.73664693023551 | 0.0154385012919005 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -4.46464638151455 | 0.0126922740996574 |
| 6 | Nipponbare // shoot // No_DIS;Fr13_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | 1.29193448576559 | 0.0351534048149291 |
| 7 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | 6.6526817961588 | 2.79175790770746e-09 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -5.13283812643879 | 0.00487256201538002 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -5.60901530537016 | 0.00237361703138483 |
| 10 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12 | 3.89783551728598 | 0.0471242959338325 |
| 11 | Nipponbare // leaf // "wild_type,control,2"--/--Nipponbare // leaf // "wild_type,drought,2" | 7.79963117486907 | 5.37053117178246e-06 |
| 12 | Nipponbare // leaf // control--/--Nipponbare // leaf // drought | 7.79954645996636 | 5.43605009944368e-06 |
| 13 | Nipponbare // leaf // "wild_type,control,1"--/--Nipponbare // leaf // "wild_type,drought,1" | 7.79944487055968 | 5.39146876756212e-06 |
| 14 | Nipponbare // shoot // No_DIS;_mock_inoculated--/--Nipponbare // shoot // No_DIS;Fr13_inoculated | 7.00861919608323 | 6.02646366802726e-06 |
| 15 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -5.0278473900316 | 0.00849910040351966 |
| 16 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | 4.32713969343729 | 0.010958436613545 |
| 17 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -5.74656914238233 | 0.00132706821897584 |