Chr:
Chr12
Start:
7575923
End:
7578175
Strand:
-
Ref_name:
LOC107279586
Sequence
(XR_001541907.2):
UUUCCCACAUCGACCGAUCUCUUCGAGCUCCGUCUCUCUCUUCCCAUGGCCGAUCGUCGACGUCGUCGGUCGAUCUCCCCAUCCGUAGCUCCUCUUCCCCUCUCCUCGCACCACCGGCUUCGCCUCCCUCCGACGAGCCCAUUUUUCCCGUUUCCCCCUUCUCUCCCACUCCAUAGCAGCCACCAUCAUCACUUCUUUAAGCGGUCAGAGCAAGUUCUUGCCGCCUCCGUUCUGGUUUCCUUCCUCUUCCUCUCUACCAGCCACCGACCUCCUCGAGUACGCAUCGAGCGGGAACACGAUAUGCCACCGGCGUCGCCGCAUUCCGGCCACCGGAGGGCCGGCGCCCCGCUCGCCCUCUCCUCUCUCUCCCUCUCGGUUGCCAACAGAAAAAGAGAAGAGGAAUCGGGAGGAAGAAGAAGAGAAAAAAAAAAGAAAAAGAAAAAGGACAGCUAAUGACAGUAGAGUCUAUUAUAAUUGGAUGGCAACCUUUGGUAUUUCAAGCAUUGGAUAAUCAGGUUGGCUAUCUCGGAUUUAUUGCGUUGGAGCAAGGCAAGUUAUUAUUCCUCUCCUUUGAGCAUAAAUGCCCUAUAUUCUAUAUCUUUAUUUUAUGCAUUAGUCAUUCAUGAUUUCGAAUGCAUAACCUGCCAACAUCGGCUGGUUCUCUCAUUUGCCCUUGAAGCAGACUUGAGGUCUUGGGGGCAUGAUAGCCGAUGACUGGGGGAGCUAAUCCACCUCCAUUUGGUAGAAGGCCUGGAGCAUAUUCUAUGUCCCUGCCACUGUUGCUCUUGCGAGGAGGAGAAGAUUCUGUUGUCUGCAAGGCAAAGAAAGAAGUUAGUCAAGAUUCAAGUCGGCUAACAAUUAUUCCAACAGAAUUGACAAAGUAAAAAUAUACCUGAGGGACAACAUCUGGAAAUAAAUCUAUCAUGUACAUAGAGGCCGGCUGAUGGAAUAUAUGCUGCUUCCAUUCACCCCCACCAUCUGUCAAAAUUCCUACUCCUGAACCUUGCCAGCUCUAUGUUCUCGAUACUGCCUAAAGGAGGUCCUGGGAUGUUGAGCAGCCGAUCCAUCAUCAAUGUUGAUGAGAUUUCUCCUCUGUACUGGAUCUUAUCGGCAAAGAACAAGUCGAUUGAUAGCUGUCCCAUUCCAAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
69.51%
ME_num:
MEP:
26.22%
HE_num:
HEP:
4.07%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
embryo
Tau :
0.85
Avg Expression:
2.09
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | 2.51579167265716 | 1.42061828447704e-07 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -2.27497748980368 | 0.0165459095060691 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -4.6329580198844 | 0.00353654720075493 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -5.76546829272094 | 0.000291770803245589 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hN | 1.6510238279377 | 0.00649576863810587 |
| 6 | Nipponbare // leaf // H2O_control--/--Nipponbare // leaf // Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 3.92363527690495 | 2.26995719669222e-14 |
| 7 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | 2.98538474165845 | 0.000137430211883456 |
| 8 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 1h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 1h50 min" | 6.10766994679618 | 7.3298309137066e-15 |
| 9 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS256 | 2.70550478884727 | 0.0105892923130316 |
| 10 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS279 | 3.31308782464369 | 0.000310679471500403 |
| 11 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | 3.47011073860486 | 1.0500578340838e-15 |
| 12 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | 3.29406577897479 | 4.79296263957922e-06 |
| 13 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -6.14903581289185 | 5.33286203568915e-05 |
| 14 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_L8 | 3.41944803646807 | 0.000421352844023162 |
| 15 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12 | 3.59713753693021 | 6.84979262893578e-06 |
| 16 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_RS105 | 2.5834053809788 | 0.0176341951372073 |
| 17 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7341 | 4.08859408798734 | 1.94751164813089e-05 |
| 18 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7331 | 4.09943183903153 | 0.000327715824179405 |
| 19 | Nipponbare // leaf // "wild_type,control,2"--/--Nipponbare // leaf // "wild_type,drought,2" | 4.77936514505999 | 0.0228075533193869 |
| 20 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7342 | 3.15203451628845 | 0.00127418120406668 |
| 21 | Nipponbare // leaf // control--/--Nipponbare // leaf // drought | 4.77929858223765 | 0.0229855500988522 |
| 22 | Nipponbare // leaf // "wild_type,control,1"--/--Nipponbare // leaf // "wild_type,drought,1" | 4.7791392666879 | 0.0228645446870536 |
| 23 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | 2.31574823946365 | 0.0279880883433657 |
| 24 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | -5.14482275974088 | 0.000288997614149328 |
| 25 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -4.32418936661151 | 0.000334952381634188 |