Chr:
Chr12
Start:
751911
End:
756447
Strand:
+
Ref_name:
LOC107279573
Sequence
(XR_001541851.2):
CCCUCCGCCCUCCGUCGAAUCGUCAACCGCGGCCCUCGCACAGUCAGACCCCCAUCCCGCGCCGCCCUUCGCACUCUGCCCUCCACCAAGUCGUCGUCGCACAGGCCUUCCCGCCGCCGAUUCGCUCCGCCGCCAGGACCCAGCGCAAACUGCAGUCACGUCCUUCCCCCUCCCCGUAUUCACGCGCUCCCUCCCUAAUCCCUAACCGCGCUGUCUUCCUCCGUCAAUCCCCGUCGAAUCCACCGCCUCAAGCGUCGUGGCUCGUCGCCGUUGCAGUCGUCAUCGAGAACGCUGCCGAUCCCCAGUCGAAGCCGCCCUCACGUAGUCCUCAACCAGUAGCCGCCGCCGCCGCCUAGCCCUGUGCCCUCGCCAGAUCGACGCCGUGACGCUCUGCCUCCUUGCCCUGGUCGCCUCAUAGCAUCUCGCGCCAAAUCGCGUGGGUCACACCUCUGUCCACGGCCACCGCGGACCGCGCCCCUCCAACCGGACCAGCAGCAUCGCCACUGCCGACGGGAGCAGCAUCCCCGUCCAAAUCGGCGGCAGACAACCAGGUGGGCUUCCAGCCUUCCACACGAACCAUGGCGAGGUGCUGCUCUGUUGCUGGGACAUGGUUGAAAGGUGAAAUUAAACAAACAUUGUCUAUUCAUCACAUCAUAUGUGUCUAGCUAACUGCUAAGGUACAUAUAGUCGCUACUCUUGCUGAUAUGCGCAUGUUCACUGGCACGCCAGUCUAUUCGGUUUGCCGCCGGCUGCGAUGAACAAGAGCUGGAUUAAUCUUGCAAAAAAGUUCUUUUUUUCAACUGUAUAUCUGUUCAGAUUUUUCCGAAUUGCAUUAAUAUACUCCCUAUGAAUCUUUAUAUUAAACGCUGCAAUCCUUGUUAUAAAUCUACAAUUUUUCCUAAUUGCAGGAUGUGCUACCAUGAUCAUUCGUAUGGCAUGUCACUGACUCACUGUCACUUAACCUGUUGAUAACUGUACAUGCUAUUUUGGUAGCUCAAGUUAUGGUGGAAUAUUUAUAAUCAUUUUAUAAACUCUGAUGGUAAAUUGGUACGACUUCACUCCAUAAGUUUUGUUUCUCUAUGCAUUAUGAAAAUGACACCUUUGUGAUUUGUUAAUGGAAUGCGGGAUAGUAUAUCUGUUUAGUUUAAGAUAUUUAGUGUUUUCGUGGAUGUAUAUUGACCACAUAUUCGGUUAAUAUUUCUUAAUUUGGGUGCACGGUGAAUCAGACCAUAUAGGCUCAGUUGGAUCUGUUGAGAUAAGGUUGCGUUCUUUUGGUGAGUUUGAAGAAAGAUUUUUCGCGCACGUAAAGCAAGAAAGCUCAUUAGCACAUAAUUAAUUAAGAAUUAACUAUUAUAAACUUUAAAAUAGAUUUAUUUGAUUUUUCAAAUAUCUUCUAUAUAAUUUUUUUAAAAAAAACUCGCCAUUUAGUAGUUUGAAUUGUGUGCUAACGGAAAACAUUGAAGUUAAAGUUUGGAGUCGAAGACAAACAUAUCAAUAAGAUGUGCUUGUGCUGGCUGGUUAAUCGAACAGCUCCAUCAACGCUGUGGGGCUUGGAAGAGGUUAAAGGUAUGGCUGGGUAUACGAUACAAUGGUUUCAUUUCCUGUUUUAGGUAAAUGUGGAAACUCUUCAAAUGAAUGUGAAUAUCCUCGACAUAUAACAGUGCUUCUUGUCCUGCCACCUAAUAAUGUAAUUCUUGUAGACUACUUGCAUAGAUCUGCUACUAACACACACAGCCAGGUUGCAACUAUCAUUGAUUCAUAGAAGAAUGGUAUAGCAUAUCCAAUGUAACACUGGAAUCCAUCUUGUACGUGCUGUUAAGAAAGACAUUAAGUGCUUCAUAGGUGAUACAGCUAUACAGUUGGAGAUGUAAGUUUUGCAUGAUCUUUUUUAUUUCUGUUCAUCUGUUUACUGGCAGUUGUGAUCAUGUUCCUUUUUAUCAUGACCUUGUUUAUUAUUUUUCAUGGAGGAACAAAUGGAUUUUGUCAUCAUCAAGGUAGAGAAGAGGGACAUGAUGACAUUGCAGCGCAAGAAAGCAUAGGCACCACCGCACCAAGCAGACACAAUAAUCAGACUUUAAUUCAUAUUAAUGAAUGAAUACUAAUUCAUAUUUUUGUAUUUGUAUGCCUUGAUGACCUGCUCUACAGAGAUGGGAUUGCAUGGUCUAUUCAAUUUAUUUAUAAUUAAAUAUGCUUAUUUUUCUUCA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
32.32%
ME_num:
MEP:
60.37%
HE_num:
HEP:
7.11%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
2nd_leaf
Tau :
0.87
Avg Expression:
7.56
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -2.36223229896576 | 0.0059831660835951 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 1.75118699269373 | 0.000401230920522588 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -2.50343980094404 | 0.0103745741599243 |
| 4 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 1h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 1h50 min" | -2.38966067327965 | 0.00640383084510162 |