Chr:
Chr11
Start:
2456523
End:
2457569
Strand:
+
Ref_name:
LOC107279539
Sequence
(XR_001541601.2):
GUGGAUAAUAAAGUAAGUCACAAAUAAAAUAAAUAAUAAUUUCAAAAAAUUUUGAAUAAGACGAGUGGUCAAACGUUGCAAGCAAAAACUCAAAAUCUAUUAUAUUAUGGGACGGAGGGAGUAUUCAAUAAUACUUUCUCAUUAUUAUACUUCUGUGCCAUAUAAAUGAUAGAUAUAGUAAAGUAAUUGUUGGUCAAAGCCUUGUUCUAACAAAAACAAAUAUGCCUUGUAUUUUGAAAUAGGGGGAGUAUUCUACAAGAACAUGAGAUGGUGAUUCUUCCUGUUUGCCGUCGAAACCGUCGUUACUCGACACCUCGAAAUGCCUCGACGAAACUGCGCUGUCCACCAAACGUCAGCCCCUCAAAAUGACAGCUGUGGUAAGUUGAAUGCAUGUUGAUGGGAGGAUCAUUGUGGGGGCAACCUGUGGGAGGCAGCAAAGAUAUUCAGAUGAUGGCAGGCAGACUUUGGAGGGAGGAUUGCCAUGACCCAAUGGAAUAUCCAUGAAUCAGUGAUUCGGCAUGUCUCGGCCGUCGGUUGAAUCUAGGUGCUGACUGGUUUUGAGCCUUGAGAUCCCUGUGGAACUAUGGAUUCACUUCAUGGAUGGAUGAGUGUGGAUUCACUUCAUGGAUGGAUGAGGCAUGAGGAGCUGUAGAAGCAUCAAAAUUUUACCCACUUUUGACGACAAAAUCGCUAGUUAGUGGAAAUGUGAGUUUUCUUUGAUCCUUCUUGAAGCACUCCUCUUUUGUCAAAUCGAUGAACGCUGACAACAUUGCAAUGAAGGGAUUUAUGCUCAUACCCAUACUACAGGUUCAGAGUUGUUUUGUUAAUGAAUUAUUACUUGUCUAUAUAGUUCUCUGUGAAUUGACCAGUUGAUGACAAUUUGAGUUUCUGUACUCGAUUCCAAAUUCAAUGAAUAAUUCUUUCUAGGGGGAGGGUUGAUUACAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
58.13%
ME_num:
MEP:
39.02%
HE_num:
HEP:
2.64%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
embryo
Tau :
0.79
Avg Expression:
2.77
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 2.72322986794399 | 0.00416544666609192 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 2.59759045243641 | 0.0155678846887805 |
| 3 | Nipponbare // root // "mock,7_days"--/--Nipponbare // root // "auxin(50CM_2,4_D),7_days" | 1.58590477617393 | 0.048789135748275 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 2.38378487879217 | 0.0172402235819211 |