Chr:
Chr11
Start:
13999581
End:
14000213
Strand:
+
Ref_name:
LOC107279523
Sequence
(XR_001541479.1):
CAGUUAGUUACACAUUCUUAAUUAUCCUCAGUAAUGCUAAGCUUCAUUCAUAUUUCUUUUUUCCUGCUUAUGUUGCCAAUUGGUAGGGUUUAGUUACUUAAACAUCUCAAGCCUUUUACUUCCAUGGUUCCAUCUACUGUGAUGGCCAAUUGCAUUUUUCAUCAGUAUGGCAAAGAAACAUGAUGCAAUAAACCAUAUUGUAAGAAAAUCCUCUUGGCAAUACAUCAAUUAGAGUACUGAGCGCUUAAUAUUCCAAUAUUGUACUAAGUUAUCAACUGUACAAGGCAAUUAUCUGUGUUGACUGUUGAAGUUUUAAUCUCUCGAGCAUGCCGUCCCGUGCUCUCUUGAGCGAGUUAGUGCCUGCAGAUGAGCUGAUCUUCAGGUGUAUUGGAAAAAAAAAAGGAAAGGAAGAAAUCGGCUUUAAGUAGAGUUUGCUGGGACCAUUUUGCAGAUUAUAAAUGGAAGAAUUUUGGCAUACUAGUUAAAUGCCUGUGCUUUACUAUGUAUAAAAGGAAAAAAAAUCAUAAUAUUGCCUAAAAUAAAUAAAAACAUAUUUU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
16.46%
ME_num:
MEP:
70.53%
HE_num:
HEP:
12.8%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
embryo
Tau :
0.80
Avg Expression:
9.28
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 1.18619908412879 | 0.000411837522704085 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | 1.24840722660658 | 8.17483500432465e-05 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | 1.2421695430003 | 1.66869334288348e-05 |