Chr:
Chr11
Start:
4297522
End:
4298266
Strand:
-
Ref_name:
LOC107279521
Sequence
(XR_003239315.1):
UUUAACAAUAAAUCAAAUGAUAGAAAAAGAAUUAAUAAUUACUUUUUUUAAUAAGACGAACAGUCAAACAUGUUUAGAAAAGUCAACAGCGUCAAAUAUUUAGAAACGGAGGGAGUAUUUAGCAUGGCUUGCACCUGCAAUCUUCAGAGCUCAUUGAUUUUGUUCGCCGUUUGGCAUUGGCUGCUUGUUUAUACAUAUACUUAGCCAUGCAGUGCAAUCUGUACAGGAAAUUUUGUCUGAAAGCAUCGAUCAGAGUUUGACUCUUCGAGUGGAUUUUGAUCUGACAGUCACCAUGACCCGGGUUUACAUCGAGUUUUUGCUAAUCUGUUUGCAUGUUGUAAAAUAGUAUUACUUUGCUGAUGAGAAGCUUUACUAUUGCUUGAUACAAAGUCGGCUAAAUAUCUCUGCUUACAAGAAACAUCAAAAGCACCAGACAAGAAAUCGAUUAGGCAUACUCCACCAAGUAAGUUGCAGGCUUUCAUAUAUGUUCAUCCAACAUCACUGACUCAGCAUCCUAGCUUUUGCUAGGUUUUCUUGAAUUUUAUAAACAGAAGGUGCACAAAUGCAAGAAUGCACCUGUAGUUAUGACUUUAUACACCACUACUUUUGAAAAUGCAAUUAGCACAUGAUGAACUCUAUACUGAUUAUGCAGGAAGAAACAAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
42.48%
ME_num:
MEP:
43.5%
HE_num:
HEP:
13.82%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
flower
Tau :
0.81
Avg Expression:
7.27
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | -1.99401913045171 | 0.00946632420245995 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 4.02381110181255 | 2.05860749854117e-19 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -1.67027713032726 | 0.0143154020152047 |
| 4 | Nipponbare // shoot // No_DIS;Fr13_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | 1.91278048258236 | 0.000123873046098255 |
| 5 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | 4.37508337093864 | 1.13935402635798e-28 |
| 6 | WD20342 // leaf // none (control)--/--WD20342 // leaf // 0.5% Na2CO3 solution for 36h | -3.71343079765579 | 0.00410367643268104 |
| 7 | Vialone_Nano // root // control--/--Vialone_Nano // root // 100 mM NaCl | -2.1550596107274 | 0.00937600724755273 |
| 8 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | -2.44228833229524 | 0.0373184446700391 |
| 9 | Nipponbare // shoot // No_DIS;_mock_inoculated--/--Nipponbare // shoot // No_DIS;Fr13_inoculated | 3.2294738740339 | 6.23837533162335e-05 |
| 10 | Nipponbare // shoot // "Control,22C for 10 min"--/--Nipponbare // shoot // "Heat,42C for 10 min" | 2.43778103433017 | 0.00309914845383533 |
| 11 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | -4.73661306994588 | 0.00492109135276725 |
| 12 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | -4.00596852371886 | 1.10397569712347e-06 |
| 13 | Nipponbare // leaf // Drought;Long_Day--/--Nipponbare // leaf // Drought;Short_Day | 3.67632146740697 | 0.0164351490439591 |
| 14 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -1.45899699070801 | 0.0157844994961736 |