Chr:
Chr1
Start:
171000
End:
172079
Strand:
+
Ref_name:
LOC107279520
Sequence
(XR_001541469.1):
CUCACGUCAAUGCCAAUCACAAGCAAAGGUACAUGAAUUACUGUUCUAACUGCGGAUUGAUGCUCGAGGGACUGCUGGCAAUCCUAGCUCAUCCACCUGCACCAGAUAGCACCAGGCAACAUUCAGUACAAGCUUAAAACAGGAGCGGUAGGUGCAGCUGGCAAAUUAAGCUCUGCAUCGAAAUCGGAUUCCUUGUCUGGUUGAAGAUACGAUGGGACUGCACUUGACUCAAACUCCAUAUCAGCCUCCAAAGCAUCCAGUUCUGCAAUGUUCAAGAAACAACGACAGUAGAUAGAUUAUUAUCUCCAGCCCUGCAAUGGUCCCAGGAAGAAUGAAGGCAUGGCAACAAGCUAGGCAAUUUAUGGCAUGAAUCUAUGUUAUUACUUCCAGAUGCCUAUGAAUGACAAUAAUGCCAAGUAAAUUGCCAACCAUCAUUUUCCAAUUGGCCAACUGAUGGUACAGCGUCCAUACCUCCCAUUAGUUCUUCCUCAUCAACAUCGUCAGGGAUGUUGUAGCUUCUACCAAGGGAUUCUUGUAUUUCGUUGCUCACAUCCAUCAGGUCAGUCAUUUCAUCUUGCAUAUUCUACAGGUGGAUCAGGGCAUUCGUUUUACGCGAAAAAAGAUGAUAAUACUCAAGAUAGUCCAACAAGCAAUUUCAAGGGCGGUUGAUAACCGCACUUAAAAAAGAUUGACAAUUGUGGUUUUUGUAUGGUUUUCUUGUAAAUCAAUGGAUAUACUGGUGUAAAAUGUGUUGAUGAUCUAAACAAUAGGCAAAUCCUGCAGAUUA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
12.4%
ME_num:
MEP:
81.5%
HE_num:
HEP:
5.89%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
callus
Tau :
0.77
Avg Expression:
7.73
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | 4.77531896180026 | 0.00448576390462865 |