Chr:
Chr11
Start:
3675970
End:
3680592
Strand:
+
Ref_name:
LOC107279514
Sequence
(XR_001541397.2):
GAUCUCCUCCCCACGCCCACUCCUCCUUCCCCCACGCCGCGUCCUUCGCUCUCCUCCCUGUGUCGCCUCCUUGCCCCGCCGUCUCGUCGCCUCCUCACCAGCCAUGCCCGCCGGCCUCCUCUCCAGACCUGCAAUCGCCGCCGCCCUCUCCAAUCUCCUCCGCGCCUCCACCUCGCAUCGGAUUGAUCCUCCACCUUCGCCCUCCUCCCUGCGUCGCCUCCUCACCUCGCCGCCGCAUCGCCUCCUCAGCAGCCACGGCCGCCGGCCUACUCUCCAGACGCUCCCUCGCUGCCGCCCUCGCAAAUCUCCUCCGCGCGCUCUCAUCCCUCCCCUAACCAUCACCGGCCGCCUCCCCUUCCAACCUCCCCUAGCCAUCCGCCCGUCGCCCCCUGCCCACCGAAGACGGAUUUCAGUUAGCGUUAGUGAGGUGGAGGCUUUGUUCGAGCUGUUCAAGAGCAUUAAUGGUUCUGUGAUCGACGAUGGGCUUAUCAAUAAGAUCGCCAUGCAUAACCCCGCAGAUCAGAGAUCUCAUGUGUCCAUAUCCUGUUGUUUCCGGUCGACAUCCUUGGUUCAUCAUUACCUCAAUUGAAGUUUUAGGUGCCAGUUUUGGUGUGAAGAACUAAAUUGAAACCGAACAAUGAUUUUCCACAGUUGCGGUUAACUUCUAAACAAGUUAGUUCUGCAAUGGAUAACAAUGGUGGCGGUUCAGCACCAAUAUCGUCCAAAAGAUCAUGUCAUUGUUUCAUCCAUCCAGCCAUGGUAAUAUCCAUUGCUCAAUUGAUAUAUUUUUGCUUCCUAAUUUUACGUACACUCUUCCUUUAGGUCUUUUUGUGGAUAUAACUAAUGUGAUUAAUGCCAAGUUGACAAAUAAGCAUGCCGCGGUUAUCCAAAGUGAAAUCAAUGUUCCAAAAGACCGUGAGAACUAUCAACAGAUCAACAAGAACUCUACAUCUAAGAUUCAGAGAGCCUCAACUAUUGGAUUUGGCAAUGAAAAUAACGCUUCUGUCAUUAGGCAUGUGCGGCUACCAUGUACAGACAAAGCCGAAUUGUCGUACGGUACACCCAACAUGCAUGAAGAUGUUACUAAUCUCAGUACGGCUGAACUAAAAAGGAAGCGUGCUAGAGAGAGGUACGCAUCAUUGACAAAAGAGCUAAAGGAAGAUGGAAACAAGAAGAGACGUGAUUCCAGAAAGCGGAGGAAGGAUGAAUCAAUAGGUUUUUAUAAAUUAACACAUCUAUUGUUAUCAAAAUUUGGACUUUUUGAACACAACACCUUAUUAUUAUUGAAUUAAUUCAACUCUUUCAGAUCAUUGAUCUCAAGAUUCCACGACCAAAAUGGCUACUCCUGUGUCCUCAACUGUUUCAGGUUGAUGUGUAAUAUGGUAACAUGUAGAAAUUUGUUAGGUGUUUCGUACCAAAUACGUUCUAAUCUGUUUGGAUAUGAGCAGCCCCGCUUGGAGAUAUUACAAAUGUACGUGCUGACAGAUUGCUUCUGAUAGUUUAACAAAUUUUCACUCAAUUUCUUUUCACUUAAUAAAAUUACCCGUUGCAAUGCACGGGCACCUUACUAGUUUUCUACGAAAACAGAACUGAAAAA
Sequence
(XR_003239583.1):
GAUCUCCUCCCCACGCCCACUCCUCCUUCCCCCACGCCGCGUCCUUCGCUCUCCUCCCUGUGUCGCCUCCUUGCCCCGCCGUCUCGUCGCCUCCUCACCAGCCAUGCCCGCCGGCCUCCUCUCCAGACCUGCAAUCGCCGCCGCCCUCUCCAAUCUCCUCCGCGCCUCCACCUCGCAUCGGAUUGAUCCUCCACCUUCGCCCUCCUCCCUGCGUCGCCUCCUCACCUCGCCGCCGCAUCGCCUCCUCAGCAGCCACGGCCGCCGGCCUACUCUCCAGACGCUCCCUCGCUGCCGCCCUCGCAAAUCUCCUCCGCGCGCUCUCAUCCCUCCCCUAACCAUCACCGGCCGCCUCCCCUUCCAACCUCCCCUAGCCAUCCGCCCGUCGCCCCCUGCCCACCGAAGACGGAUUUCAGUUAGCGUUAGUGAGGUGGAGGCUUUGUUCGAGCUGUUCAAGAGCAUUAAUGGUUCUGUGAUCGACGAUGGGCUUAUCAAUAAGGUGCUUCCUCACUUCCAAUCUUUCAUGGAAUGGCAGCCAUAUUGUAGAUUAGUAUUCUUGAGAAAUGUCAUAGGAAAUGGAUCAUUUCACAAAUCAUAACAAUUUAUUCUUGGUAAGUAUUAAGGCUGGCCCAAUCAUAUCAUUUUAUUCUUGAUUUCAUGUUAACAAGCUGGCCCAAUUAACCAUUGAUCAAUAUUUUUUUUGGAAGAUAAACUUCAUUUAAUAAUGCCAUGAAUUGGAGAAGGAUGAGAAAACAAAUUACUAGACAAUAUUCAGUGGUAUUAUUUGGGAUGAAAUGUUUUAGGCUAAUAUAUUUUUAUUUACAUUCCCCUUUUCUACCCUCUAAGUAAAUAACUGAAAAUAGACGUCUUAGCUUCUUUUCGAUUCUCAGAAAUUUCGCUAAUUUGAGCAAGUUCAGCAGAUCGCCAUGCAUAACCCCGCAGAUCAGAGAUCUCAUGUGUCCAUAUCCUGUUGUUUCCGGUCGACAUCCUUGGUUCAUCAUUACCUCAAUUGAAGUUUUAGGUGCCAGUUUUGGUGUGAAGAACUAAAUUGAAACCGAACAAUGAUUUUCCACAGUUGCGGUUAACUUCUAAACAAGUUAGUUCUGCAAUGGAUAACAAUGGUGGCGGUUCAGCACCAAUAUCGUCCAAAAGAUCAUGUCAUUGUUUCAUCCAUCCAGCCAUGGUAAUAUCCAUUGCUCAAUUGAUAUAUUUUUGCUUCCUAAUUUUACGUACACUCUUCCUUUAGGUCUUUUUGUGGAUAUAACUAAUGUGAUUAAUGCCAAGUUGACAAAUAAGCAUGCCGCGGUUAUCCAAAGUGAAAUCAAUGUUCCAAAAGACCGUGAGAACUAUCAACAGAUCAACAAGAACUCUACAUCUAAGAUUCAGAGAGCCUCAACUAUUGGAUUUGGCAAUGAAAAUAACGCUUCUGUCAUUAGGCAUGUGCGGCUACCAUGUACAGACAAAGCCGAAUUGUCGUACGGUACACCCAACAUGCAUGAAGAUGUUACUAAUCUCAGUACGGCUGAACUAAAAAGGAAGCGUGCUAGAGAGAGGUACGCAUCAUUGACAAAAGAGCUAAAGGAAGAUGGAAACAAGAAGAGACGUGAUUCCAGAAAGCGGAGGAAGGAUGAAUCAAUAGGUUUUUAUAAAUUAACACAUCUAUUGUUAUCAAAAUUUGGACUUUUUGAACACAACACCUUAUUAUUAUUGAAUUAAUUCAACUCUUUCAGAUCAUUGAUCUCAAGAUUCCACGACCAAAAUGGCUACUCCUGUGUCCUCAACUGUUUCAGGUUGAUGUGUAAUAUGGUAACAUGUAGAAAUUUGUUAGGUGUUUCGUACCAAAUACGUUCUAAUCUGUUUGGAUAUGAGCAGCCCCGCUUGGAGAUAUUACAAAUGUACGUGCUGACAGAUUGCUUCUGAUAGUUUAACAAAUUUUCACUCAAUUUCUUUUCACUUAAUAAAAUUACCCGUUGCAAUGCACGGGCACCUUACUAGUUUUCUACGAAAACAGAACUGAAAAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
70.93%
ME_num:
MEP:
20.33%
HE_num:
HEP:
8.54%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
anther
Tau :
0.82
Avg Expression:
3.67
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Caidao // leaf // none (control)--/--Caidao // leaf // 0.5% Na2CO3 solution for 36h | 4.16395398905746 | 0.00281083077075417 |
| 2 | Azucena // root // control--/--Azucena // root // Al | -1.21867697513148 | 0.0110927551741581 |
| 3 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 10.5h | 1.11858929148125 | 2.10041653643612e-06 |
| 4 | IR64 // panicle // Dawn--/--IR64 // panicle // Dusk | 1.18443437583154 | 8.14600755219897e-05 |
| 5 | WD20342 // leaf // none (control)--/--WD20342 // leaf // 0.5% Na2CO3 solution for 36h | 6.22838313469193 | 0.00017942749962916 |
| 6 | BR-IRGA_409 // spikelet // control condition (29C) for 7 hrs--/--BR-IRGA_409 // spikelet // high temperature treatment (38C) for 7 hrs | 1.53165069894344 | 0.00116005892600702 |