Chr:
Chr11
Start:
17074161
End:
17075388
Strand:
+
Ref_name:
LOC107279510
Sequence
(XR_003239551.1):
ACUGAAAAUUUCCUUUGCAGGGGGAUCCAUUGGAUCUAAUUACAAUUUAGAGCUGCGAAAAAAAAAAUCUCCUGCACUCAUUAUUAAUUUACGGUGCAUGGGAUAAUCGUUGACCUCUAUGAUGAACUCGGAGUCGUGCUGGACUAUGAUACAAAUUCUCCAUAAGAUUGAUAUUAGCCUAACUGUUUCUGUCAUGCAAGUACCAUCAGUGCUAAUCCUGCUUUCUUUGAAAUGAAACGAUACAAGUGACAAGAACUGAUGUACCUUCGGUGACUUUGUGUAGAUGCAACCAAGGGAGGCAUUUUUCACCACGGAGAUUGGGCAAUGAGCUGUAUUCUGCCAGCGGCUGAACCUUAUCCAGGGGCCUCUGAUGUCGACCGUGAGUUCGUCGCGCUGGGCGCCUAGGAGGAGUGGCACACUGUUUUUUUUCAUGCUUAUGGGCCUUAAUCAUGACUGUAAUGGCCGACCCAGCAAAUCCGAGGCCGGAUUACCGAUAAAUCUGAAUGGACAAGCAUUUCAAGCAUGGUGGCCUGGUGGGUGCAGUGCAAGUGCAACCGUAGGGAACAUUUCUGCUGAAAAUUGUUUUCUAGGUUUGAAAAAAUGCUCUGAUUUUGAUGUUAGGUUUCAAUUGGUUUGAUCAUUGGCAGCACUCUAUAUUUUCUAAUAGCCUUUCUAGGUUGAAUAUGUCAUGGUUUUUAGACAAUACAGCCUACAUUACACGACAACAUAUUUAUACAAUAUUAAUUGGCCGUUUUGUUAGGAGCUUCGGCUUCAUCUUAGAUCCCUCGCUCUAGUCAGGCCUAUGUAUUAAGUUGCUUAUGUAUAAAAACUUAUUGGCUUGUCCUGGACUAUAAGCCUGGCUUGUAUGUUGCCAUCCUUGGUUUUUCAUGGAUGACUAGCUAGCUUAUUGUUGAAAAAUCUCUAGAUAUUCUGAGGUUCUA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
20.12%
ME_num:
MEP:
41.67%
HE_num:
HEP:
38.01%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
embryo
Tau :
0.72
Avg Expression:
14.15
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | -1.67423598095059 | 4.80198628054264e-18 |
| 2 | Caidao // leaf // none (control)--/--Caidao // leaf // 0.5% Na2CO3 solution for 36h | -3.99356264259561 | 0.000365076806060538 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | -1.30691985487001 | 2.4101061986985e-14 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -3.253908437334 | 1.08047309085052e-49 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -2.43449307092115 | 3.71877934686574e-18 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -3.46133849080648 | 2.9212463008379e-36 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -3.02659836885121 | 1.73027544681452e-34 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -1.67808528973997 | 2.03669546363623e-22 |
| 9 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP2286 | 1.29067694584104 | 1.96642700289548e-05 |
| 10 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS279 | 1.36937806906625 | 6.41487595558877e-09 |
| 11 | Baldo // root // control--/--Baldo // root // 100 mM NaCl | 1.00420094476951 | 0.00578298033941988 |
| 12 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -3.31813683745333 | 2.92740575689497e-52 |
| 13 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -2.63688755597813 | 5.67697645406673e-48 |
| 14 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_L8 | 1.12773736514217 | 9.51127392947031e-05 |
| 15 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12 | 1.00124025617222 | 7.94305968001973e-05 |
| 16 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_RS105 | 1.23362082076927 | 8.2984570006667e-08 |
| 17 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7341 | 1.14655521170965 | 3.6161957111256e-07 |
| 18 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | -2.54594426502327 | 3.94870595098421e-05 |
| 19 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Watered;Short_Day | 1.75160933225132 | 0.000517641516453349 |
| 20 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -1.80573670472675 | 6.53568857090267e-20 |
| 21 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | -1.62626096736531 | 5.48057356194406e-12 |
| 22 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -2.69281437957681 | 6.21147259622268e-55 |