Chr:
Chr11
Start:
28936141
End:
28936726
Strand:
+
Ref_name:
LOC107279509
Sequence
(XR_001541380.2):
UCCAGAUCCUCCACAGGCCACACGCUGAAGAUUGGGUUCUGCACACGUGGCGCAAUCUCGGCCGGCCGAUCCACAGCAUAGCAUGACUUGGACCUGGAUCGGAGUCUGUGAGCGAGUUAGGAGUAUAUUGUAUUAGUGUAGCUAGCGACCAGUUGCUUCAUCAGCUCAGCUACUACAUAACCUCUUCAUUUUGCAUCACCACAGAAAAGCCUUUUGCUGCCUCUCGUUGCCCGGCUUCUUGGAUGAGGCAUGGCAUGCAAAUUGUAUUCUAGUUGGACUACCACAAAUAUUUUGCUCUGCUACCUGCACAUAUUCUGCUUUCUCGAUAACCAUCAGGCUAGGACUGUCAUUUGGCACCACACAAACUUCUCUUAACAUACAACAUAAGCAUUGUACGUUUUUUCCCCUUUGAUGGUUUCCGUUACCACAAAAAUACAAAAAUUCUAAUUUUGCACUGC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
61.38%
ME_num:
MEP:
36.99%
HE_num:
HEP:
1.42%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
2nd_leaf
Tau :
0.76
Avg Expression:
2.06
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 4.16928607113081 | 0.0475759810013355 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 5.26101006432907 | 0.000913667028176119 |
| 3 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | 2.49478935013464 | 0.00864404387747447 |
| 4 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS279 | 3.13072891784551 | 8.64195426219466e-05 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 4.21553347534418 | 0.0128673937082506 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 4.00404663223005 | 0.0203764459347538 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | 4.26019451322108 | 0.021187786169042 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | 4.19722577865781 | 0.0099440140031156 |