Chr:
Chr1
Start:
848376
End:
857425
Strand:
+
Ref_name:
LOC107279476
Sequence
(XR_001541354.2):
UCUUCUCUUCUCAACUUCUCACGCGCAGGCGGGUGUGCGGGCGCGGCCGCCGGCGCUGCGGGCUCUGCGGUGCACGGGGAAGAAGCGGGAGAGGGGGAGAGGAGGCGGCCGGCACCAGAGAAGGGGAGAGAGGCGGCCGGCGCGAGGCCCGCGCCGAGGUGGAGGGCAUGGGCGCCCCGGCGCUCCCCGCGCGCCACCGCCUGCGCGUGGAGGGGAACCGGUGGCAGCGGGACUGGAAGUUGUCGGAGGCCGCCGCGCGCCUAGGCCGGCGCCGUCUACGUGCUCAACUGCUGGGCUGGCCGCAACUUCCCUCUCCUCAUCCGCACCAGCUCGUAAGAUUUGCUGCCGCACCCAGGUGGAUCAGCUGCCCGACGGAAUGGAGCCGAUACACCCUUAAGAUGGCCGCAAGAGAAAGAAGGACACUUGUGAUGCCUUCCUUCAACAUGAUCCAGUACAAGACUCACAACCACAAAUAAGAUACCAGUAGCUAAAGCUUGCACGGCAUGAGCAUAUGCUCCAGGAAUCGCCAUGGCAGAUAGACUCUUGGGAGGGAUGAACAAGAUUUUGCCACAUUAAGUAGGGCGAUUACUCUACAAGAUUGUGAUGUUUUUUUUUUCAGGAAUACGCAAGGAGCGCAUCUUUGUAUUAAGAGGAGAUUGUGAUGCUGUUGACUCGAGAUUGAGAUGUUGUUGACUUGGAAGUUUUGAUUCACAAAACUACAAUACUUUAGCACUCAAUUCCUGCCCAAUUUUUUCGUACCCUCAGUAAUAAUAGGCUGCAGAUAACUGGAACAGCGCCAUAUGUAAGUUCCAUCCACUGGUGGAAUCACCCUCUGCAGUCACUUAGCUAUCAAGAGUUCAUGGCAAAUCUUAUCGUGAUUCAGCACAUGCUGCCUUUCCAUGUCACCUCAGUAGAUUUGAUCUUAGCACAAAAUGUAUAAGUUCCAUUUGGCAUUUACAAGUCUUCUGGAAUAAGAAAGGAAAAACGAGGACAUCCACAGGCCAAAAAUGAAAAGAAUAUUGUAAACAGUCUAAACCACAGAAUUUUUCUAACCAGCAAAACACGGCAGAAGUAUCAUUGGCUGCUGAAUUUCCUUCUCUACCACUCCUGAGUGGAUAUAUGAGAGUAACCAAUGGGCAGGAUCUGGUAUUUACCAUGGAGACAUCAGAAGGGGGCACUAUGGUGCAUUCAGUGGAACCCAAAAAAUCGACCCUCAAUGACAAAGGUGGUAAACAUGUUAACAGGGAGGUUGCAGAAUCUAUAGGCAGGAGGCUCCCCACGGUCUAGAAUGUGGGAGGCGGAGGUGUUGUGAUGGACCGAGAGGAGAUGAUAAAUGUGGCGUCGGGCUUGGUAGAGAUUAGACAAAUCGGUGCCGUCAGCGGCGCCACCAUUGAUGAUCUGAGGACACACGGCUGCAACAACAGACGACGAUGAGGGCGACGGCGAGGCAUGGUCGCAAAGCUACCGGGAGGAAGCGGUUUACUCAUCUGCCAACGGAGAGGACGAGCGGCGGCGGAGGCGUAGGCAGGCCGCAGCCGCCGGAAUGCCGGAUUAACCGGAGCGCGCCGGCGGGGAUGCGGCGGAGGGAGGGGAAGGGGAAGGGAAAUCACGUUCCGGGCCGAUACCGUUCUUCUGGGCCGACAGCUUCAGCCCUAAAAUGUUUCAGCCUACUAAAGCUGCAAGGCCAGAAGGAGACGCCGCGGGGACAGGCCUGCAAUGCAUACAUGCAAGGCCUUCUCCCAUAGUGGGCUGCAUUGCAGUUUAUGUGGGCCUUACUGAUCUCCUCUUACAAAAGGAUUCGGCCCACCCACAAGCUUAAUCAGGCACGACCCGAUCAUUACCGUGGGCCUUCAUCCAGCCACUAUCAUCCAAACGCAGCGAUGAUAGACACCAUAUCUAAUUUUACGAUUUUGCUAUACAUCUCACGGGUGAUUUUUUUUGACUGAUAUUUCAUGUUUUUCUAUCCAUAGGAUCCCUCGCUAGGAUUUGUGCAAUAAUUGGUGGAGGCUGCAUACGUGGAUAAUACCAUGCGUCGGAUGUGGAGGAGGCUUGCAGCUCUGUACCUGUGCCGCUGCGCGUGCUAUGCUUUCCUCCUGUGGUCAGAGUCGUCAGACAAACAUAAACAGGGGGUGUACAGUGAAUUUGUUAGUCAUACAUGAAUAUAUUGGAUAUUUGGAUUACAGCUCCCAGCGAUAACAACAGGCGCUACUAGGCUGUCCAAAUCGUGGCAUUUCAUUUCAGCAAAAA
Sequence
(XR_001541360.2):
CUCUUCUCUUCUCAACUUCUCACGCGCAGGCGGGUGUGCGGGCGCGGCCGCCGGCGCUGCGGGCUCUGCGGUGCACGGGGAAGAAGCGGGAGAGGGGGAGAGGAGGCGGCCGGCACCAGAGAAGGGGAGAGAGGCGGCCGGCGCGAGGCCCGCGCCGAGGUGGAGGGCAUGGGCGCCCCGGCGCUCCCCGCGCGCCACCGCCUGCGCGUGGAGGGGAACCGGUGGCAGCGGGACUGGAAGUUGUCGGAGGCCGCCGCGCGCCUAGGCCGGCGCCGUCUACGUGCUCAACUGCUGGGCUGGCCGCAACUUCCCUCUCCUCAUCCGCACCAGCUCGUAAGAUUUGCUGCCGCACCCAGGUGGAUCAGCUGCCCGACGGAAUGGAGCCGAUACACCCUUAAGAUGGCCGCAAGAGAAAGAAGGACACUUGUGAUGCCUUCCUUCAACAUGAUCCAGUACAAGACUCACAACCACAAAUAAGAUACCAGUAGCUAAAGCUUGCACGGCAUGAGCAUAUGCUCCAGGAAUCGCCAUGGCAGAUAGACUCUUGGGAGGGAUGAACAAGAUUUUGCCACAUUAAGUAGGGCGAUUACUCUACAAGAUUGUGAUGUUUUUUUUUUCAGGAAUACGCAAGGAGCGCAUCUUUGUAUUAAGAGGAGAUUGUGAUGCUGUUGACUCGAGAUUGAGAUGUUGUUGACUUGGAAGUUUUGAUUCACAAAACUACAAUACUUUAGCACUCAAUUCCUGCCCAAUUUUUUCGUACCCUCAGUAAUAAUAGGCUGCAGAUAACUGGAACAGCGCCAUAUGUAAGUUCCAUCCACUGGUGGAAUCACCCUCUGCAGUCACUUAGCUAUCAAGAGUUCAUGGCAAAUCUUAUCGUGAUUCAGCACAUGCUGCCUUUCCAUGUCACCUCAGUAGAUUUGAUCUUAGCACAAAAUGUAUAAGUUCCAUUUGGCAUUUACAAGUCUUCUGGAAUAAGAAAGGAAAAACGAGGACAUCCACAGGCCAAAAAUGAAAAGAAUAUUGUAAACAGUCUAAACCACAGAAUUUUUCUAACCAGCAAAACACGGCAGAAGUAUCAUUGGCUGCUGAAUUUCCUUCUCUACCACUCCUGAGUGGAUAUAUGAGAGUAACCAAUGGGCAGGAUCUGGUAUUUACCAUGGAGACAUCAGAAGGGGGCACUAUGGUGCAUUCAGUGGAACCCAAAAAAUCGACCCUCAAUGACAAAGGUGGUAAACAUGUUAACAGGGAGGUUGCAGAAUCUAUAGGAUCCCUCGCUAGGAUUUGUGCAAUAAUUGGUGGAGGCUGCAUACGUGGAUAAUACCAUGCGUCGGAUGUGGAGGAGGCUUGCAGCUCUGUACCUGUGCCGCUGCGCGUGCUAUGCUUUCCUCCUGUGGUCAGAGUCGUCAGACAAACAUAAACAGGGGGUGUACAGUGAAUUUGUUAGUCAUACAUGAAUAUAUUGGAUAUUUGGAUUACAGCUCCCAGCGAUAACAACAGGCGCUACUAGGCUGUCCAAAUCGUGGCAUUUCAUUUCAGCAAAAA
Sequence
(XR_003240228.1):
CUCUUCUCUUCUCAACUUCUCACGCGCAGGCGGGUGUGCGGGCGCGGCCGCCGGCGCUGCGGGCUCUGCGGUGCACGGGGAAGAAGCGGGAGAGGGGGAGAGGAGGCGGCCGGCACCAGAGAAGGGGAGAGAGGCGGCCGGCGCGAGGCCCGCGCCGAGGUGGAGGGCAUGGGCGCCCCGGCGCUCCCCGCGCGCCACCGCCUGCGCGUGGAGGGGAACCGGUGGCAGCGGGACUGGAAGUUGUCGGAGGCCGCCGCGCGCCUAGGCCGGCGCCGUCUACGUGCUCAACUGCUGGGCUGGCCGCAACUUCCCUCUCCUCAUCCGCACCAGCUCGUAAGAUUUGCUGCCGCACCCAGGUGGAUCAGCUGCCCGACGGAAUGGAGCCGAUACACCCUUAAGAUGGCCGCAAGAGAAAGAAGGACACUUGUGAUGCCUUCCUUCAACAUGAUCCAGUACAAGACUCACAACCACAAAUAAGAUACCAGUAGCUAAAGCUUGCACGGCAUGAGCAUAUGCUCCAGGAAUCGCCAUGGCAGAUAGACUCUUGGGAGGGAUGAACAAGAUUUUGCCACAUUAAGUAGGGCGAUUACUCUACAAGAUUGUGAUGUUUUUUUUUUCAGGAAUACGCAAGGAGCGCAUCUUUGUAUUAAGAGGAGAUUGUGAUGCUGUUGACUCGAGAUUGAGAUGUUGUUGACUUGGAAGUUUUGAUUCACAAAACUACAAUACUUUAGCACUCAAUUCCUGCCCAAUUUUUUCGUACCCUCAGUAAUAAUAGGCUGCAGAUAACUGGAACAGCGCCAUAUGUAAGUUCCAUCCACUGGUGGAAUCACCCUCUGCAGUCACUUAGCUAUCAAGAGUUCAUGGCAAAUCUUAUCGUGAUUCAGCACAUGCUGCCUUUCCAUGUCACCUCAGUAGAUUUGAUCUUAGCACAAAAUGUAUAAGUUCCAUUUGGCAUUUACAAGUCUUCUGGAAUAAGAAAGGAAAAACGAGGACAUCCACAGGCCAAAAAUGAAAAGAAUAUUGUAAACAGUCUAAACCACAGAAUUUUUCUAACCAGCAAAACACGGCAGAAGUAUCAUUGGCUGCUGAAUUUCCUUCUCUACCACUCCUGAGUGGAUAUAUGAGAGUAACCAAUGGGCAGGAUCUGGUAUUUACCAUGGAGACAUCAGAAGGGGGCACUAUGGUGCAUUCAGUGGAACCCAAAAAAUCGACCCUCAAUGACAAAGGUGGUAAACAUGUUAACAGGGAGGUUGCAGAAUCUAUAGGAUCCCUCGCUAGGAUUUGUGCAAUAAUUGGUGGAGGCUGCAUACGUGGAUAAUACCAUGCGUCGGAUGGUAGGCCUGGUUCUUUUCACUUUACAAAUUUUUGAAACUAUAAAAUAAAAAAUAAAAUACAAAAUUAUAGUCCUAUAUAACUAAAAUUACAUGUGCAUAUUAGGUUGAUAUGACAUGUAAGCACACU
Sequence
(XR_003240229.1):
CUCUUCUCUUCUCAACUUCUCACGCGCAGGCGGGUGUGCGGGCGCGGCCGCCGGCGCUGCGGGCUCUGCGGUGCACGGGGAAGAAGCGGGAGAGGGGGAGAGGAGGCGGCCGGCACCAGAGAAGGGGAGAGAGGCGGCCGGCGCGAGGCCCGCGCCGAGGUGGAGGGCAUGGGCGCCCCGGCGCUCCCCGCGCGCCACCGCCUGCGCGUGGAGGGGAACCGGUGGCAGCGGGACUGGAAGUUGUCGGAGGCCGCCGCGCGCCUAGGCCGGCGCCGUCUACGUGCUCAACUGCUGGGCUGGCCGCAACUUCCCUCUCCUCAUCCGCGAGCCAACUCGAUCUCAAUCCUGUGGCCUGAGACUUUGCGCUUGUACUGAUCAAGAAGAUGAUUCCACUGCGGAAGAGGGCAAGUGCUACCGGCUAUGUUGGCGUCGACGACCCAAAAGCGUCUGUAGUCGUAGUUGAUUUCAUUCACAUGGUGGAUCAGCUGCCCGACGGAAUGGAGCCGAUACACCCUUAAGAUGGCCGCAAGAGAAAGAAGGACACUUGUGAUGCCUUCCUUCAACAUGAUCCAGUACAAGACUCACAACCACAAAUAAGAUACCAGUAGCUAAAGCUUGCACGGCAUGAGCAUAUGCUCCAGGAAUCGCCAUGGCAGAUAGACUCUUGGGAGGGAUGAACAAGAUUUUGCCACAUUAAGUAGGGCGAUUACUCUACAAGAUUGUGAUGUUUUUUUUUUCAGGAAUACGCAAGGAGCGCAUCUUUGUAUUAAGAGGAGAUUGUGAUGCUGUUGACUCGAGAUUGAGAUGUUGUUGACUUGGAAGUUUUGAUUCACAAAACUACAAUACUUUAGCACUCAAUUCCUGCCCAAUUUUUUCGUACCCUCAGUAAUAAUAGGCUGCAGAUAACUGGAACAGCGCCAUAUGUAAGUUCCAUCCACUGGUGGAAUCACCCUCUGCAGUCACUUAGCUAUCAAGAGUUCAUGGCAAAUCUUAUCGUGAUUCAGCACAUGCUGCCUUUCCAUGUCACCUCAGUAGAUUUGAUCUUAGCACAAAAUGUAUAAGUUCCAUUUGGCAUUUACAAGUCUUCUGGAAUAAGAAAGGAAAAACGAGGACAUCCACAGGCCAAAAAUGAAAAGAAUAUUGUAAACAGUCUAAACCACAGAAUUUUUCUAACCAGCAAAACACGGCAGAAGUAUCAUUGGCUGCUGAAUUUCCUUCUCUACCACUCCUGAGUGGAUAUAUGAGAGUAACCAAUGGGCAGGAUCUGGUAUUUACCAUGGAGACAUCAGAAGGGGGCACUAUGGUGCAUUCAGUGGAACCCAAAAAAUCGACCCUCAAUGACAAAGGUGGUAAACAUGUUAACAGGGAGGUUGCAGAAUCUAUAGGAUCCCUCGCUAGGAUUUGUGCAAUAAUUGGUGGAGGCUGCAUACGUGGAUAAUACCAUGCGUCGGAUGGUAGGCCUGGUUCUUUUCACUUUACAAAUUUUUGAAACUAUAAAAUAAAAAAUAAAAUACAAAAUUAUAGUCCUAUAUAACUAAAAUUACAUGUGCAUAUUAGGUUGAUAUGACAUGUAAGCACACU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
52.85%
ME_num:
MEP:
36.79%
HE_num:
HEP:
10.16%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
2nd_leaf
Tau :
0.94
Avg Expression:
19.10
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Nipponbare // leaf // H2O_control--/--Nipponbare // leaf // Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | -1.81659009922215 | 0.00514226733864925 |
| 2 | Nipponbare // shoot // No_DIS;Fr13_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -2.00912352041011 | 4.61316206919795e-11 |
| 3 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 10.5h | -2.15703669364458 | 0.0336773147141369 |
| 4 | IR64 // panicle // Dawn--/--IR64 // panicle // Dusk | -2.02480932566078 | 0.0260876345344441 |
| 5 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -2.27696091824298 | 6.99669056424354e-16 |
| 6 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS256 | -1.61887205546721 | 0.00103878648556159 |
| 7 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_L8 | -1.45824910851556 | 5.83046052262881e-05 |
| 8 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12 | -1.1150706767634 | 0.00792801168088411 |
| 9 | Nipponbare // leaf // "wild_type,control,2"--/--Nipponbare // leaf // "wild_type,drought,2" | -4.53084822577838 | 2.56415074890465e-09 |
| 10 | Nipponbare // leaf // control--/--Nipponbare // leaf // drought | -4.53097134449544 | 2.6792282510379e-09 |
| 11 | Nipponbare // leaf // "wild_type,control,1"--/--Nipponbare // leaf // "wild_type,drought,1" | -4.53102045949969 | 2.58412969546249e-09 |
| 12 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | -3.03102582990578 | 0.000171351866857477 |
| 13 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | -1.07641276878706 | 1.94415168540525e-05 |
| 14 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Watered;Short_Day | 1.62725938659586 | 0.0239032903251982 |
| 15 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | -4.85359091175775 | 4.5562235746715e-33 |
| 16 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -4.53080224329781 | 0.00672166204738125 |