OSA-LNC107279463


Function Link


Basic Info

Chr:

Chr11

Start:

23997725

End:

24001265

Strand:

-

Ref_name:

LOC107279463

Sequence
(XR_001541323.2):

UCUCUCUCUCUCUCACUUUCUCCUCUUAGGGAGCACGGCCGGCCGGCAGGGGAGGAGCGCGACGGGCGCGCGACGGCCAGCGAGGGAGGAGCGCGGCUGAGAGGAGGGUUGGCGCGAUGGGUGGCGGUCGGCGACGCGGAGCACGACGACGACUUGGGGCCGCCGCUCGCUUGCUCCUGGGGGCUGGAAGAGUAGCACGCAGCCACGCACUCAGAGUGGAAGCGGUGGGUGUCCGGCGACGUCCCGAGGCGGGCGAGGACGGCGGUGGCUUGCCUCCCGCUCCUCUCCCCGCCGAUCUCCCUCGCCGGCCCGCGGGUGCGCGCGGAGAGGAAGAAGGGCAGCGGCCGGCCGGCAGAAUAGCCGCUCACAGCCUCACACCCGCUCAAAUUCUUCACAAUCUAUGGGCUGUGGCUAGUGGCCGCAGUACAGCUAUGGGGGAUGCCAUCCUGCUGCAGACCAACCACAUUCGACGUUAACAAGGUGCCAACCAUGCGGGGACCUAGUGCACCGGCGGCGCGGCGCACUGAGGACGACGAGGGGCGGCGGCGGCACGCGGCGCGCGGUGAAGGCCGGCCGUGCGUCGGCGGGGUGCGGCGCACGGCGUGACGGCAGCCGACGGCGGGGCGCGGUGGCGGCUAGGCGGCGGCCGCGACGCGGACACGCGGCGGCGGCGCGGCUAGGACACGGGCUCGUGGUGGCUGGCGUGCGGCGGGCCGGCGGCUCACGGCGCCACGCCAUGCGGGGCGGCGUGGGGGCGGUCAAGCGGGCAUGGCGCGGUGCUGCGAGCACGCCGCGGACGGCGAAUGCGGUGCAGCGGGCUAGCACGGCGCGGUGCGGCGACGCCGGUGGCCGGGUGGGUGCGGGAUACGGCUGAGCGGCGGCUCGGCGCGGGAUGCGGCCGAGCGGCCAUGGCUGCUCGCUGCUCCGCCCUUUUCCUUUUUUUUUUCUUUCUUCAUUUUCUUUUCCCGUUGACUUCGUGUGGUCGGGGAGGCGCGGCGGCGCGGCUGGGCGACGACCGGCGUGACGCGGCGGAGUUCAGUGCAAGGCGCGGCCCAGGUAGUGGCGCGGUCCGGGGCGGCCGUGCAGGUGCUGUGGCCGGCGCGCAGCCGACGUCUCCAUCAGUGCCCUUUCGUUUUCUUUUCUUCGCCGGGGACGAGAGAGGGUGCUGAUGUGGCAUCCUAUUACGUGGAUCCCACGCUAACUCAGCCGCCACGUCGUAUAAAGCCGAAGUCAAAACCACCGAAAGACUCAAAUCGAACGGUUUUGUAAAGUUGAAGGAUGUCAGUUUUGCGGUUGAGGGAUGAUUUUGUAAUUUGAUGACAAGUUGAGGGACCUUAGGUGUACUUUUUUCAUUUCCUAAUUUAUAUACUACCUGAAAGGCUGAAAUGAAUAGGAAAAAGUACACCGAAGGUCCCUUAACUUGUCAUCGAGUUAUGAAAUCGUUGUCCAACCACAAAACCAGAUAUAUAAUAUCCCUCAACUUAAAUAACCGUUCACUCUCUUCAUGUCAGCGUGGCUAUGUCAUCACCUCUCUCUUUCCCUCCUCUCUCUCUCUCUCUCUCACUUUUCUCCUCUUUCCCCGCCGCGCCGUGCCUCCCUCCCGGUGCUCGCUCUCCUCCUCCUCCCCUUCCGCGUCCUCGCCGCUGCCGCGGGGUCCCACUUCUCCCCCUGCGGUCUCCCGCCUCGCGGGCCGCCUCCGCCUCUCCCCGUCCAUGGCCGCCGUCACGCUCCUCGCGCUCGGCAACGGCGCGCUCGACGUCACGGGCGAACGAUGCAGGAGGGACGGCGAACGGCGCGGCGAUGAGCGCGACAGCCCCGACGACGAACGCGGAGAUGAACGGGCAUCGACGGCCGGCGACAGACGACAAGGCGGCGACACUGGAGAAGGGAGGAGGCCGGCGGGGCGACGAAGGAGAGGAGAAGGUCCGGCGGCUGGCUCGCGGCCGCUCGCUCGCCCGCCACCGCCGCUCUGCUCCACCGACCGCGCGCUUGCCUGCCGCCGACCCGCCGUCGGCGCUUCGCUCCGCCGGCCGCUCACCCGCUGCACGUGCGUGCCCGCUGCCGCUUCACUUCACUCUGCGCCUGACACUCACCGACGCCCCGACCCCUCCGUCCUCGGCGAGCUCGUGUACAGCAUCCCCGGCGCCAAGAACGUCCUCGAGAUGCCCCUCCUCGCAGCUCAGGCACGUACAUGAACUCUCAUGCGAUUAUCCAUUUAAUCAUUGUGUUUGUUGCUCAUAAUUGUUAGCUAAAUAAUGUAAUCUUGUGCAGUUUCUGUUGUUGCGUUGCAUACAGUUGGCUGUGUUAGAAUCUGGCAGCAGCCGGUCAGUAGUGGAUCUAGAUCAAUCGGGCUUCUUUCUGUUAUGCAUGUAACAAACUCUGUAAUUGAGGAGAAUAAAUAGAAAACCAGAAAAGCAGCAAAGGUAUUACGCUGCGCCAAAAACUCUGCUCGUUUUCUCUGUUCUUCAGUUAAACUGUUCACGUUCGACAAAAGGUUCAGAGAUUGUGAGAGUGAGAGUGAGAGUUCGUGAGUUUUGAUUCAGUGUUUCUGUGUUCCUAACAAUAAUCAUCUACGAGUUCUUGUUAAUGGCGAUGGUUUAGGUGACUCAAGUGCGAUGGGUUCGUGCUCGGUCUCGCCAUCAACCACUGCAUGUUCAACGGCGUCGGCGUCAUGCAGUUCGUCAACUCGGGGUGUGCCGCUCUCCGUCCCGCCGGCGCUCGACCGCGCCCUGCUCCGCGCGCGCGACCCCCCGCAGGUCGCGUUCCUGCACCACGAGUUCACGCAGAUCGACGACGGUGAUGACGGCGGCUCGCCGGCGCAGAACGGCGCCGAGCCGUUCCUGCACAGGUCGUUCCGGUUCACGUCCGAGUCAAUCGCCCACGUCAAGGCGCUCGUCUCGGUCGACGGCGGCGGCGGCGGGCGCGCGCCCACGGCGUUCGAGGCGCUGGGGAUGGGGCAUGCGUGGCGGAGCAAGCUCCUCUUCGCCGUGGACGGGCGGCCGCAGUUCACGUCGCCUCCUCCGGCAAGGAGACGCCGGGCCCAGCCCCGCGCUCGCGGGCGCUGCCCUCCGGCCGGCCUGCCCAGAGGAGAAAAGUGAGAGAGAGCGAGAGAUUGGAGGAAGGGAGAGGAAAGAGGGAGGAAAGAGAGGUGAUGAUAUGGCUUACUGACAUGUGGGGCCCACGUGGGUCCCACGCUGACUCAGCCGCCACGUUGGAUAAAACCAGGGUCAAAACCAUCAAAUGACCUAAAAUAAACGGUUUUGUAAGUUGAGGGAUGUCAUAUAUCGGAGGACGAUUUCGUAACUCGAUGACAAGUUGAGGGACCUUGGGUGUACUUUUUCCAAA


Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

315

LEP:

64.02%

ME_num:

173

MEP:

35.16%

HE_num:

3

HEP:

0.61%

Type:

HCR (High-Capacity ncRNA)


Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

shoot_apical_meristem

Tau :

0.82

Avg Expression:

3.68

Tip: OSA-LNC107279463 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Caidao // leaf // none (control)--/--Caidao // leaf // 0.5% Na2CO3 solution for 36h-7.469196188046257.42813862947804e-07
2Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated-2.245881696736650.000374057413219165
3Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day-1.816841238572360.02093171739229
4Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day-2.201229555488620.0341948975654277