Chr:
Chr11
Start:
23997725
End:
24001265
Strand:
-
Ref_name:
LOC107279463
Sequence
(XR_001541323.2):
UCUCUCUCUCUCUCACUUUCUCCUCUUAGGGAGCACGGCCGGCCGGCAGGGGAGGAGCGCGACGGGCGCGCGACGGCCAGCGAGGGAGGAGCGCGGCUGAGAGGAGGGUUGGCGCGAUGGGUGGCGGUCGGCGACGCGGAGCACGACGACGACUUGGGGCCGCCGCUCGCUUGCUCCUGGGGGCUGGAAGAGUAGCACGCAGCCACGCACUCAGAGUGGAAGCGGUGGGUGUCCGGCGACGUCCCGAGGCGGGCGAGGACGGCGGUGGCUUGCCUCCCGCUCCUCUCCCCGCCGAUCUCCCUCGCCGGCCCGCGGGUGCGCGCGGAGAGGAAGAAGGGCAGCGGCCGGCCGGCAGAAUAGCCGCUCACAGCCUCACACCCGCUCAAAUUCUUCACAAUCUAUGGGCUGUGGCUAGUGGCCGCAGUACAGCUAUGGGGGAUGCCAUCCUGCUGCAGACCAACCACAUUCGACGUUAACAAGGUGCCAACCAUGCGGGGACCUAGUGCACCGGCGGCGCGGCGCACUGAGGACGACGAGGGGCGGCGGCGGCACGCGGCGCGCGGUGAAGGCCGGCCGUGCGUCGGCGGGGUGCGGCGCACGGCGUGACGGCAGCCGACGGCGGGGCGCGGUGGCGGCUAGGCGGCGGCCGCGACGCGGACACGCGGCGGCGGCGCGGCUAGGACACGGGCUCGUGGUGGCUGGCGUGCGGCGGGCCGGCGGCUCACGGCGCCACGCCAUGCGGGGCGGCGUGGGGGCGGUCAAGCGGGCAUGGCGCGGUGCUGCGAGCACGCCGCGGACGGCGAAUGCGGUGCAGCGGGCUAGCACGGCGCGGUGCGGCGACGCCGGUGGCCGGGUGGGUGCGGGAUACGGCUGAGCGGCGGCUCGGCGCGGGAUGCGGCCGAGCGGCCAUGGCUGCUCGCUGCUCCGCCCUUUUCCUUUUUUUUUUCUUUCUUCAUUUUCUUUUCCCGUUGACUUCGUGUGGUCGGGGAGGCGCGGCGGCGCGGCUGGGCGACGACCGGCGUGACGCGGCGGAGUUCAGUGCAAGGCGCGGCCCAGGUAGUGGCGCGGUCCGGGGCGGCCGUGCAGGUGCUGUGGCCGGCGCGCAGCCGACGUCUCCAUCAGUGCCCUUUCGUUUUCUUUUCUUCGCCGGGGACGAGAGAGGGUGCUGAUGUGGCAUCCUAUUACGUGGAUCCCACGCUAACUCAGCCGCCACGUCGUAUAAAGCCGAAGUCAAAACCACCGAAAGACUCAAAUCGAACGGUUUUGUAAAGUUGAAGGAUGUCAGUUUUGCGGUUGAGGGAUGAUUUUGUAAUUUGAUGACAAGUUGAGGGACCUUAGGUGUACUUUUUUCAUUUCCUAAUUUAUAUACUACCUGAAAGGCUGAAAUGAAUAGGAAAAAGUACACCGAAGGUCCCUUAACUUGUCAUCGAGUUAUGAAAUCGUUGUCCAACCACAAAACCAGAUAUAUAAUAUCCCUCAACUUAAAUAACCGUUCACUCUCUUCAUGUCAGCGUGGCUAUGUCAUCACCUCUCUCUUUCCCUCCUCUCUCUCUCUCUCUCUCACUUUUCUCCUCUUUCCCCGCCGCGCCGUGCCUCCCUCCCGGUGCUCGCUCUCCUCCUCCUCCCCUUCCGCGUCCUCGCCGCUGCCGCGGGGUCCCACUUCUCCCCCUGCGGUCUCCCGCCUCGCGGGCCGCCUCCGCCUCUCCCCGUCCAUGGCCGCCGUCACGCUCCUCGCGCUCGGCAACGGCGCGCUCGACGUCACGGGCGAACGAUGCAGGAGGGACGGCGAACGGCGCGGCGAUGAGCGCGACAGCCCCGACGACGAACGCGGAGAUGAACGGGCAUCGACGGCCGGCGACAGACGACAAGGCGGCGACACUGGAGAAGGGAGGAGGCCGGCGGGGCGACGAAGGAGAGGAGAAGGUCCGGCGGCUGGCUCGCGGCCGCUCGCUCGCCCGCCACCGCCGCUCUGCUCCACCGACCGCGCGCUUGCCUGCCGCCGACCCGCCGUCGGCGCUUCGCUCCGCCGGCCGCUCACCCGCUGCACGUGCGUGCCCGCUGCCGCUUCACUUCACUCUGCGCCUGACACUCACCGACGCCCCGACCCCUCCGUCCUCGGCGAGCUCGUGUACAGCAUCCCCGGCGCCAAGAACGUCCUCGAGAUGCCCCUCCUCGCAGCUCAGGCACGUACAUGAACUCUCAUGCGAUUAUCCAUUUAAUCAUUGUGUUUGUUGCUCAUAAUUGUUAGCUAAAUAAUGUAAUCUUGUGCAGUUUCUGUUGUUGCGUUGCAUACAGUUGGCUGUGUUAGAAUCUGGCAGCAGCCGGUCAGUAGUGGAUCUAGAUCAAUCGGGCUUCUUUCUGUUAUGCAUGUAACAAACUCUGUAAUUGAGGAGAAUAAAUAGAAAACCAGAAAAGCAGCAAAGGUAUUACGCUGCGCCAAAAACUCUGCUCGUUUUCUCUGUUCUUCAGUUAAACUGUUCACGUUCGACAAAAGGUUCAGAGAUUGUGAGAGUGAGAGUGAGAGUUCGUGAGUUUUGAUUCAGUGUUUCUGUGUUCCUAACAAUAAUCAUCUACGAGUUCUUGUUAAUGGCGAUGGUUUAGGUGACUCAAGUGCGAUGGGUUCGUGCUCGGUCUCGCCAUCAACCACUGCAUGUUCAACGGCGUCGGCGUCAUGCAGUUCGUCAACUCGGGGUGUGCCGCUCUCCGUCCCGCCGGCGCUCGACCGCGCCCUGCUCCGCGCGCGCGACCCCCCGCAGGUCGCGUUCCUGCACCACGAGUUCACGCAGAUCGACGACGGUGAUGACGGCGGCUCGCCGGCGCAGAACGGCGCCGAGCCGUUCCUGCACAGGUCGUUCCGGUUCACGUCCGAGUCAAUCGCCCACGUCAAGGCGCUCGUCUCGGUCGACGGCGGCGGCGGCGGGCGCGCGCCCACGGCGUUCGAGGCGCUGGGGAUGGGGCAUGCGUGGCGGAGCAAGCUCCUCUUCGCCGUGGACGGGCGGCCGCAGUUCACGUCGCCUCCUCCGGCAAGGAGACGCCGGGCCCAGCCCCGCGCUCGCGGGCGCUGCCCUCCGGCCGGCCUGCCCAGAGGAGAAAAGUGAGAGAGAGCGAGAGAUUGGAGGAAGGGAGAGGAAAGAGGGAGGAAAGAGAGGUGAUGAUAUGGCUUACUGACAUGUGGGGCCCACGUGGGUCCCACGCUGACUCAGCCGCCACGUUGGAUAAAACCAGGGUCAAAACCAUCAAAUGACCUAAAAUAAACGGUUUUGUAAGUUGAGGGAUGUCAUAUAUCGGAGGACGAUUUCGUAACUCGAUGACAAGUUGAGGGACCUUGGGUGUACUUUUUCCAAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
64.02%
ME_num:
MEP:
35.16%
HE_num:
HEP:
0.61%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot_apical_meristem
Tau :
0.82
Avg Expression:
3.68
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
Num. | Condition | log2(FoldChange) | Padj |
---|---|---|---|
1 | Caidao // leaf // none (control)--/--Caidao // leaf // 0.5% Na2CO3 solution for 36h | -7.46919618804625 | 7.42813862947804e-07 |
2 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -2.24588169673665 | 0.000374057413219165 |
3 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | -1.81684123857236 | 0.02093171739229 |
4 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | -2.20122955548862 | 0.0341948975654277 |