Chr:
Chr11
Start:
28695470
End:
28697525
Strand:
-
Ref_name:
LOC107279458
Sequence
(XR_001541318.2):
GAAGGAAACGCAACAAGCUAAGGUCGGAGGUACACAAACACAAGCCUAGCUUGAAACAUUUCGUAGAGAGAAGCAUGCGGAUCAGGAAGACCACGCUUGCGUUCUUCAUUUGGGCCAUGGCCUUUGGAAUCUUGAUGACUGCCGUCCUUUCACAAGUACCAUGCUGGUGCGGUGUCUGCCCAACCACCACAUGCGACUGCUGCUAGUGGUAGUGUAUUAGUGUUAAUUUCCCUUUUUGUGUUAAUAAGUAAAUUGGUUCCCAAGAUUAUUCAUGGAGGCCGGCCGGUUUACCCAAAUACAUCCAUCAUUCAUCGUGUGUUUGUAAUAUCAGAGUUGUCUUUCUUCCCUGAUGGUGAAAUUACCUUAAAAAACUGUGUGCUUUGUCCAAAUUACAUGCAUGCGGAAUGAUCGGAAAAGUAUAAUAUAUAUGUCGCACGCACCCAACAGGACUCUGUACAUAUAUACCUAGUAUUUGUCCAAGGUGCUCUCCCAUCUGAUAUAAUCAUUUUUUGUGAGUUGUGAUACAUAAAUAUAUAUCCCGGCCGAUCGAUCAAACCUAUGUGCGCAUGAAAGGCUUUCAUGCAUUGGGCCAGAUUAAUCACUCCCAUUCGCAAUAACAACAAUUACGUGCAUCUCCUUGAUCUAUAUAUAUAAACCAAUUGAGAUCGACUAGGAAGGAAACACGCAUGCAACAAGGUCAUCAGAGUUCAGAGGUACACAAAUAAACACAAUCUUAGCUUCAAUUGCGUAACAGUUGGUAAGGAGAGAGAGCGAGUGAGUUGGAAAAGGGAAGCUAAGCAUGCGGAGGAACACCGCGCUUUGCCUUGCUCAUUUGGGCCAUGACCAUGGUGAUGUUCAUGGCUUCUCUCCUUCCAAGAGGUUCAAUCGAUCGCUACUCUCUCGCAUGGUUCUUCUCAUUUCAUUAUUGGAUAUUUUAUGGAUUCGAUCUUAUUCGAACUUAUUAUCAUAUUAUGAUCGAGCAACAAUUAUUGAUCGACAACUAUACCUUUGUUUUUUAAUAAAUAACACAUUUAUUUAUGAUCGUGCUUUUCAUGUCUUAUUUAUGUAAUUACCAUUUAUUUUUAUUGUGAGUUGUUUUCUCACUAAAAGUACUUUAAACAUAAUUUAUAUUUUAUAUAUUUACAUAAAAGUUUUAAUAAGACGUAUAGUUAAAUAUUUAUUCAAAAGUUAAUAGCGUCAUCUAUUUAAAUACAAAGAGAGUAUAUUGAGAAUAUAUAUCUGCUAAUGCAGAGUAUAUUGCUGCCCACAGGGAGUAGUAAUAAUAAUAGUCUUAUCUUUUUGGUUUUUAAUUAAUUUUCAGCUAAUGCACAAUGCCCGUGCAGUUGGUGCCUAUUCGCACCUGAUUGCUAUGACUGCUGCAGAGGAUGACCGCCUUAAUUAAUUCCUUGUGUUAAUAAAGCCAUUUUAUGGAGGUUUAUCCAAAUACUUCAUCCAUCUGAGAAUUAAUAUAUCAAACAUUACGUAUCUAAACACUAGAUGAGACAUCAAACAUUACGUAUCUAAACACUAGAUGAGACUGUCUAGAUACGUGUAGCACUAGGUGACGUACUAUCUAAUUUUAUAUUGUUAUAUUUUAAAAUAGAGGGAGUAUUACAUCCAUCAUUCAUGAGUGUAUAUAUGUUCUGUAAUCUCUAGAGUACCUACGUACGUUGUCUUUCUUAAUAUCCUUGAUGGUGGAAUAUUGAGUUAAUAAAACUGUUAAUUUGCCCAAUUAAACAUGUGGAAUAUAUCUAGAGAUGACAACGGAGAAUUCAUCGUCGGAAAUGCAUCUCCAUCCCCGCCCCCGCAAGACAAAACUUCCCCGUCCCCGUCACCGCGAAACACAACGGGAAAGCUUUGUUACCAUCCCUAUCCCCGCGGUGAUUUCACCCCUGCUUAAAACAAUAUACACAUGUCAAAUUAUAUAUGCAAUACAAUAUAUAUUCGUACUUUA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
75.81%
ME_num:
MEP:
14.23%
HE_num:
HEP:
9.76%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
coleoptile
Tau :
0.94
Avg Expression:
19.56
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 6.5312482791259 | 3.66038921482148e-07 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | 6.24507811079684 | 1.13914702295506e-06 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 8.63459132665754 | 9.32985311050679e-13 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 10.9587345650744 | 2.47686438362181e-19 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 7.54230939515424 | 2.05669553731116e-09 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | 11.3021434079948 | 3.01587586771186e-21 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | 8.07034997079915 | 3.86571304674307e-11 |
| 8 | Nipponbare // root // "mock,1_day"--/--Nipponbare // root // "auxin(50CM_2,4_D),1_day" | -1.90751343447939 | 0.0207656881399302 |
| 9 | Nipponbare // root // "mock,14_days"--/--Nipponbare // root // "auxin(50CM_2,4_D),14_days" | -2.14087442001607 | 0.00127351533120739 |
| 10 | Nipponbare // root // "mock,7_days"--/--Nipponbare // root // "auxin(50CM_2,4_D),7_days" | -3.09708900123729 | 0.000334402206431242 |
| 11 | 9311 // leaf // control--/--9311 // leaf // salt | -1.8135465940485 | 1.53822502651212e-16 |
| 12 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 10.6008711518409 | 5.65277476355529e-19 |
| 13 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 6.18989928574892 | 1.06252514084819e-06 |
| 14 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | 8.75349577250835 | 1.36678103365698e-12 |
| 15 | 9L136 // leaf // control--/--9L136 // leaf // salt | -1.80778898676042 | 3.01769205921693e-13 |
| 16 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | 9.75643868817771 | 3.88174640097763e-16 |