Chr:
Chr11
Start:
13029410
End:
13033200
Strand:
-
Ref_name:
LOC107279447
Sequence
(XR_001541309.2):
GUUCUGCAUCUCUAGCUUUCUCCUCCUCCCAGUUGCAUCUCCACACAUCACUCACCACCCGUGAGCCAAAGAAACCGAGAGGGAGAGCUCCAGCUAUCGUCUUCCCUCUCCUCUUCGUUGCCGGCCGCCAGGAAGAAGGACGCCGCAACACAUCGUCAAGACUUUGCCAACUCUAACUCUUUCCCGUUCCGUAUUCUAAUCUUCAUGCCGAACAAGUUUCCUUUUGACACCAUCUCAUUUCAUCCACUGCAGCGACGGGAACGCCAUCGUGCCCACGGGAGCUUCAGAGCGCGCCCGGAGCGCCGCCGCCACGACCUCGUCGCUGUCCCGGCUGCUGUGGAGCGAAUCCGGCCGAGCCGUCGCGCCAAAAUCUUCCCCUCGAGGUCCUCUCCAAAUGCCCUCAAGAAUCCCCAAGAUCCGAGCACCGAGGAGAGAUAUCGAGCUAUUCUUCUCCAACUCCGGCCGCCGAGCUCCAUCUUUGAUUCCUCCUUCUCCGUUCUUGUAGUGAGUCAAGCCGACGCCGUUCAUGGAGAAGGAGCGCCGUCGCCGAGCCGUUCCGAACGCCGUCGUCGACGACCAAGCUUGGCCAACCUCGUCCAAUACUACUAUAAUUGCGUAAAUGGUGAAGAAGUGAAUUAGGUGCUAACAUUUCCCAGGAACAAGGCAAGUUUUAUCCUCCCAAUAUUUGAUCACAUUGAAUCCCAUGUUUUGAGGAUUGAAAAUAUUUGUUUGCAAAGUUGCAUGUGAAUUUAGACUAUAACGGUAUUUGAAACUUGGUUAUGGUAGCUAUGACCUAAUUGCUGCAUUUACUUCUUUGAAUAAUUGUGAUCCUCACUGAUUGUAACCUUAGAAAUGGUUAGAGUACUUUCAAAGUGCUCAAUUGGGUUUAUACAUGCUUACAUAAAAGCCUUACGCUUGGCCAUGCCUAGUAGUUGCUAAAUAACUUCAUGAUCACUUUUUAAAUGAGAAUUUGGGGAGUAUUUUCACUGCUGGACAGAGGUGAAUAUCUCUGAUAUUUGUGAAUUAAAAUGUGUAAAAGUGUGAUUUUAGACUUGGGCGGCAAGUGGUAUGCAUAUGGUGCUAGUUGCAUACCGAUAGGGGGAGUGCUCGCCCUAGUCAAUUAAGGACCGAACUUUGUGUCACCAUCUAAGUAUACUGUGCAACCACAUGUGCUAGGAAUGGGACGGCCUUAGCUUAUUAAGUUGUUUAAUGUCUAACAUUGCAUUGGGAGGCCGUAGUAGUAUGAACUAGUUGGAAUGAUGGUUUAUAGGAGCUGCCUAGUGCGGUUGUGCCUAGGCGUCUAAGCGUGUCCAAUAUAACGGUUAAGUGCCUCGUGGAGGAACGGAUGUAUUCGCUGCCACGGCGCUAGGGAUGGCGAGGCCCCCCCGACCUAGCAGCACGUGGGUUGCUCCUCGUGUGGAUAAACACUUGCCGUGCUCGUGCAAGGUUAGGCAUUAGGCAAUGUAAAGGCUUCGUUAUGACCUCUAGACCACAUUCGACGUGAAGAAUGUGGUAGAGUCUUGCAAACUCAAAACAAACUAGAGUGUUCAUAUCAUGUGGGUAAAGCUGUACAAAUUCUGCAGAGUUCUUUAAAACUAAUUGAUUAGCCGUGCUCACGGUCAUGAGCGCUUUGGUGAUGUGUCAUGAGUAUAGUCUUGUGGAAGAAUUGUGUUGAGUUGUGUGAGUGAUGAUGAUUAUAAUAGUUGUGCCAUGGAAGGCAGCAAGAGUAUGCUUAUGAUGAUAUGAUGUUAUCUAUGAUGAUAUGAUGUUAAUUAUGAUGAACUUACAAAUUUGUUUUGUUAAUUGAAUCAACUCCUUUACAAAAGAUUUGUGAACCAAAACUUGCUUUAUGC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
85.16%
ME_num:
MEP:
13.41%
HE_num:
HEP:
1.22%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
callus
Tau :
0.93
Avg Expression:
4.38
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | -4.27220985472143 | 0.0130211293154238 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -3.59913766757167 | 0.019985448144969 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -4.4814807717287 | 0.0217548741274437 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -3.54918710757135 | 0.0143934140515505 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -3.35427013821337 | 0.0116319594483132 |
| 6 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | 5.80667450574783 | 0.000316551873041673 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -3.39126095649432 | 0.0368272737346844 |
| 8 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | 5.41417028053247 | 0.00504489843144563 |