Chr:
Chr11
Start:
216169
End:
219286
Strand:
-
Ref_name:
LOC107279441
Sequence
(XR_001541300.2):
GCUCCCGAGAUCGACGCCCCGCCUCCUUCCCUCCUGGUCGCUGACGCCGCCUCACUGGCUCCCCGCCACCGCCACCUCCCAUUCGCCGUCCGUAGCGUGCUCUGCCUCCGGCCUGCCUUUUCCCCACCCCAACUCUUCCUGUUCAGUUCUUCCUCACAACCGCCGCUGCCUCUUCGUCUCCAUCACCAGCGCUACGGCGCUACCUCCUCACCUCCCCACCGACGCCCCAUCACCAUCUCUGUCGCUUCCGUACACCUAACCUGCGUUGGCUCGCCGCAUCCGCCUGUAGUCCCUAUGCUGCCCUGAAAAGAGAAUAACGAACAGCAUACGCAUAGCUACAGUGGGGAGGGGAUAGAUCGGGAUGGAGGGCCAUGCCUGUUGGAUCCAUCACCGGAGCUGUCUCCAAUCUCCAUCGAGGGAUACCCAUUUCGAGAGCCCAAGGCUAUAGUUGCUCAGGUGAACCAUGCUACUGAGGCUGAAGGAAUUAUCAGCACGGAAUGAUUGGUGGUGAGAACGUGUGCUUGGGUAGGCGGCAGAUGAGGGAGAAAUAAGUGAUUGACUACUUGAUCAGAAAUACUGAUUAAUGCAAACCAUGGUUAAGUUCUUUACUGUCUUAGCGGUGCCGGGUGCAGUGCUUAUCGAUUCAAAUGAAAUAUGAUGGUCUUGAGAUGCCUUUGCGCAGACAGAACUACUUUAGCUUCUGGCCUCUCUAGAAAAGGAUGAAAUGCAUCCAACAUUUGGCAGAGUUCAAAAUGUUGCGUGAUCACCUUAUACCAAUCUUUGUAAUACUGUACUGAUUAAUAUUUGUACAAUUUGAGAAGUAGAUCUUCCUAUCAAUUUUUACAUGGGUCUAAUCUUUGUAAUAGUGAUGUCGGUUGGUAUGAUGUUGUUUAUAUGCUAUCAAUUCUACAGUAUAUUUGCAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
34.76%
ME_num:
MEP:
54.07%
HE_num:
HEP:
10.98%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot_apical_meristem
Tau :
0.80
Avg Expression:
10.25
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | -1.16917278352948 | 0.022715996182743 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -1.61635722027383 | 0.00268214606188361 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -4.13024509220951 | 0.000159445843689817 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -2.57461336158736 | 0.000584524177950083 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -3.07766720991662 | 5.82074177364217e-05 |
| 6 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 1h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 1h50 min" | 4.74459795380474 | 5.83460640051321e-11 |
| 7 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | 5.72814409859831 | 0.0220719330577434 |
| 8 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 10 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 10 min" | 3.31960141771757 | 0.000128932203237472 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -3.37900077206797 | 8.27426793644815e-07 |
| 10 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -1.75216707373345 | 0.00178282641871684 |
| 11 | Nipponbare // shoot // "Control,22C for 10 min"--/--Nipponbare // shoot // "Heat,42C for 10 min" | 2.47653357201266 | 0.0242940468130755 |
| 12 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -1.81711256729111 | 8.93921444977283e-05 |