Chr:
Chr11
Start:
4680564
End:
4682897
Strand:
+
Ref_name:
LOC107279438
Sequence
(XR_001541294.2):
ACCGGUGGCCCACAACGGUGACGGUCUAACUUCUAUGGUCAGCAGGCAUGGAGCUGAGUUGGUGGUGCUAGUGCACUGUGUGGUGUUGUGCAUAUAGCAAGAUGGCAAGGUGCAUGCAGGUCGGGCCAGUAUGGCUAGAUGGGCAGGGUUAGUGAGGAGGGGCUUACGUGGCUCGGUAUCCAGAAGUAGGGGAGGGCUCCUCCGCACAUGCGCCACAGUUCGUGGGAAAUGACGACAUAUAUGGGCCACUAUUGUACGAUCGAAUAAGACCAAACAAACAUACCAGAGAGGGUGAAUAGUAGAGAAAACAAAAAAACCCAAAAACUUUUAGUGAAAAUAAAAGUUACCUUCAAAUUGAUAGAGAUCUCGACAUAGCCCAUCUUGUCUAUCAUGUAAGCGAUAUCUUGUGAGAGUGAGUGCAGCCGAGGAGAAGAUUACCGCCUGAUAAAGCUUUCCCUAAUUGAUUUUAAGGAAGCUUUGGUGAGAUUGCUAUUGUUGCUGGUGGGUGUGAUAAGAAUGGACAGGUGCUGAAAUCUGCCGAGCUGUACAAUUCAGAGACUGGUCAUUGGGAGACUUUACCAGACAUGAACUUGGCGAGGAGGCUCUCAUCCGGUUUCUUCUUGGAUGGUUUCUACAGUUUCCAAGCCUGCUGGAUUUCCCGACCAUCCGCAUAGAGGAUUCGAGACCAUCACCUACAUGCUCGACAUGAUAUAGGCAAUUGUCAAAGUUGCAUCUGCCUGCAGCGAAAGUAAUCCCUAUCCCUAUGUUUUGUGGUUCUCCCUGUUUUUUGUAUUAGUCAUUGAGAAGUGCCAUCAGGCUUAGUUCUACUCGAUGUCAAUAAAAUUCAGAGUCAUCUUCCUGUUCCUCUUUUUUGUAGAGUAUAAGGAUAUUGUGAUCGAAAAGAGUUUAGGCACUGUGAUUUGGCUUCUAAAGAGACCUCAUGGUUUUGAGGCAUCAAAACAAAAGGCUCAUUCAUUCUGUUGUGCAUGAAACCAAUUGGUCUAAUUCCUGUGUCUGUAGAUUCUAUAGUUUCAAACUGCAGCAAAGAACAGACUACAAUUAUAGAAAUGUUGGCUUCCCAGUUCGUAAUGAAGAUGUGCGUAUCCCAGUGAACUGUACUCUCAGUGUCUGUAGUUUUAAUCUACAUUGGUGGCAAUGUCUACCUUAUAAUCUUACAAACUUCAGUCACAAAAUAAUCUUGCUACCUGAUUUUAGGUUCUAACAUUGUGUUUUUCAGAACAUCCAUGAAUAGGAGUGAAGCAUCUGUGCUGGUUUAAUUAUACAUUCAAGCAUCAACUUCAGGAUCUGUACCAUCUAUGUAUAUCAUCUUUCUGUUAUUGAUUGAUCAACCAAAUAAAUAUGUUCCUAGCUAUUGUAACUUUGGUUAUUGCUUUAACUGACAUGAACCAUGAAUUGCUUGUAUGCUAAUUAUUAAUUGUAACCUCUUUACUGAAA
Sequence
(XR_003239552.1):
CCGGUGGCCCACAACGGUGACGGUCUAACUUCUAUGGUCAGCAGGCAUGGAGCUGAGUUGGUGGUGCUAGUGCACUGUGUGGUGUUGUGCAUAUAGCAAGAUGGCAAGGUGCAUGCAGGUCGGGCCAGUAUGGCUAGAUGGGCAGGGUUAGUGAGGAGGGGCUUACGUGGCUCGGUAUCCAGAAGUAGGGGAGGGCUCCUCCGCACAUGCGCCACAGUUCGUGGGAAAUGACGACAUAUAUGGGCCACUAUUGUACGAUCGAAUAAGACCAAACAAACAUACCAGAGAGGGUGAAUAGUAGAGAAAACAAAAAAACCCAAAAACUUUUAGUGAAAAUAAAAGUUACCUUCAAAUUGAUAGAGAUCUCGACAUAGCCCAUCUUGUCUAUCAUGUAAGCGAUAUCUUGUGAGAGUGAGUGCAGCCGAGGAGAAGAUUACCGCCUGAUAAAGCUUUCCCUAAUUGAUUUUAAGGAAGCUUUGGUGAGAUUGCUAUUGUUGCUGGUGGGUGUGAUAAGAAUGGACAGGUGCUGAAAUCUGCCGAGCUGUACAAUUCAGAGACUGGUCAUUGGGAGACUUUACCAGACAUGAACUUGGCGAGGAGGCUCUCAUCCGGUUUCUUCUUGGAUGGUUUCUACAGUUUCCAAGCCUGCUGGAUUUCCCGACCAUCCGCAUAGAGGAUUCGAGACCAUCACCUACAUGCUCGACAUGAUAUAGGCAAUUGUCAAAGUUGCAUCUGCCUGCAGCGAAAGUAAUCCCUAUCCCUAUGUUUUGUGGUUCUCCCUGUUUUUUGUAUUAGUCAUUGAGAAGUGCCAUCAGGCUUAGUUCUACUCGAUGUCAAUAAAAUUCAGAGUCAUCUUCCUGUUCCUCUUUUUUGUAGAGUAUAAGGAUAUUGUGAUCGAAAAGAGUUUAGGCACUGUGAUUUGGCUUCUAAAGAGACCUCAUGGUUUUGAGGCAUCAAAACAAAAGGCUCAUUCAUUCUGUUGUGCAUGAAACCAAUUGGUCUAAUUCCUGUGUCUGUAGAUUCUAUAGUUUCAAACUGCAGCAAAGAACAGACUACAAUUAUAGAAAUGUUGGCUUCCCAGUUCGUAAUGAAGAUAACAUCCAUGAAUAGGAGUGAAGCAUCUGUGCUGGUUUAAUUAUACAUUCAAGCAUCAACUUCAGGAUCUGUACCAUCUAUGUAUAUCAUCUUUCUGUUAUUGAUUGAUCAACCAAAUAAAUAUGUUCCUAGCUAUUGUAACUUUGGUUAUUGCUUUAACUGACAUGAACCAUGAAUUGCUUGUAUGCUAAUUAUUAAUUGUAACCUCUUUACUGAAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
35.98%
ME_num:
MEP:
37.2%
HE_num:
HEP:
26.63%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
embryo
Tau :
0.78
Avg Expression:
30.57
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Nipponbare // leaf // H2O_control--/--Nipponbare // leaf // Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | -2.69788890740921 | 0.00093734937003703 |
| 2 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 10.5h | 2.05247361112635 | 0.00995907898285097 |
| 3 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS256 | -2.8005672685248 | 1.99206548260806e-06 |
| 4 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP2286 | -1.56557542396581 | 0.0163892320072877 |
| 5 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS279 | -2.2121869149098 | 0.000177198284485583 |
| 6 | BR-IRGA_409 // spikelet // control condition (29C) for 7 hrs--/--BR-IRGA_409 // spikelet // high temperature treatment (38C) for 7 hrs | 1.65597272319874 | 0.0307477462143545 |
| 7 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_L8 | -1.77292704773631 | 0.00386620293127516 |
| 8 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12 | -2.10595312685284 | 3.59111835335132e-05 |
| 9 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_RS105 | -1.35228242633849 | 0.0133338161681277 |
| 10 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7341 | -1.50952161586595 | 0.0076719332251895 |
| 11 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7331 | -2.43373989768729 | 0.000315184009723533 |
| 12 | Nipponbare // leaf // "wild_type,control,2"--/--Nipponbare // leaf // "wild_type,drought,2" | -4.17266614226832 | 1.32417190856804e-17 |
| 13 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7342 | -2.02099016285541 | 5.11257898636612e-05 |
| 14 | Nipponbare // leaf // control--/--Nipponbare // leaf // drought | -4.17276174581959 | 1.39985764508036e-17 |
| 15 | Nipponbare // leaf // "wild_type,control,1"--/--Nipponbare // leaf // "wild_type,drought,1" | -4.17289677328988 | 1.35732686786585e-17 |
| 16 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | -3.67197676717501 | 7.53726038460418e-05 |
| 17 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | -5.53721788719467 | 0.000555509976406187 |
| 18 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | -3.46835554016911 | 3.55146668575302e-14 |