Chr:
Chr11
Start:
24722884
End:
24723649
Strand:
+
Ref_name:
LOC107279436
Sequence
(XR_003239258.1):
UCCAUUAGGGUUUCUUAAUAGGCUAACAUCUCUACCCAUGGGGGUCUUAACGGGAAAAAUAUUCCCCCAUCAGGUGAGCUGGGUUCGGGGGCGUUCCCAAGCUCCCCGUACCCGAAUCCCCACGGGGGCCCUGUAUAGCACAUCCUACAUUCCUACUACCUCAUGGCCCAUAGAAAAUAAAAGCCCAGCUGCUAUAGGCCCAUCACUCGUUCACAUAUAUACACGCCAAAACCCUAGGUCCCAAGCGCACGGAGAAGAAUCCUCGCCGCUUCGCUCCCAUCCACAUCCAUGCCCUACCUCGCCGCCUAAAGUCCAAGCCGAAUGGCCGACACGGCGACACCAGAUCGACGGCCGACGCCUCCACGAGACCACGACAAGGGAUCCAGGCCGCAGUCGUCGCCGCAUGCUUCCAGGAGUCAAGGGAACCAGGUCCGCAUGUUCGAGGCAAGGUUCCACUGUGAAACUUCCAUACGGCCGAGAAGACGAGACAUCUAACAUCUUGGCUCCAUGUCCAGGACGAAAUCCAAGUGCCGAGUGCCGACGCAUCACCAACCAACCAGCUAGAUGAUUUGUACCUGUGAAUGACACGGAAGCUUGACGUUGUUUUCAGGCACUGAAGUUGAAAUCUGUUUGUUGUUCCUAUUCUUUGGGUCAAUUUUGUGUUUCAUCAGCCGAUUUGAUGAUGGUCUCA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
42.07%
ME_num:
MEP:
48.37%
HE_num:
HEP:
9.35%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
spikelet
Tau :
0.82
Avg Expression:
9.61
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 3.42411751498621 | 1.01940661975759e-07 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | 3.54361915790872 | 7.61939419515856e-09 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 2.16074085476015 | 0.00655762938269394 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 2.02270339256049 | 0.0259779774061958 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | 3.27987517377513 | 6.19703519590674e-07 |
| 6 | Nipponbare // shoot // No_DIS;Fr13_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | 1.48113061342177 | 0.00634142620791059 |
| 7 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | 1.59768234841803 | 0.0210338467241498 |
| 8 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS279 | 1.46284213906024 | 0.0386994919378591 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 2.65654991509438 | 0.000110077857622812 |
| 10 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12 | 1.5222951500641 | 0.00840910272457094 |
| 11 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | -2.92939286359367 | 0.0051471078013606 |
| 12 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | 2.07099945981217 | 0.0374024605532428 |
| 13 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | 3.17713055724294 | 5.55302000476387e-06 |
| 14 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | 2.51981997253246 | 0.000190180693364895 |