Chr:
Chr11
Start:
24504459
End:
24507447
Strand:
+
Ref_name:
LOC107279433
Sequence
(XR_001541283.1):
UGUAUAUAUUUCUCCUCGCCGAGGCCCCAAACCACAGACAUAUGGUGCUAGUUCAAUGCCCAUGUUUCUGAUGAUCCUGCUUCUUAUCACUGGCAGCCUGGUUCGUUCGGCUGCCAUCUCCGAACCUUCGAUUGCCAUCCCCGACGACGGCGGCGCCACGACGGUGUUUCCCGGGGCCAGCAUCCGCCUACUCCAUCGAUAGUUGGUUGUACCAACGACCCUUACAUUGUUACCAGUUGUGCUCCUUCACAUCGUGCUUACCAGUGCAACAGGCCACCAUGUGUCCAUAUCGUUCAUGCGAGCACCGCGGAGCAACGUUUGCCUUAAUUAUGUACUUCCUCAGUUUUAUAAUAUAAAAUAGUUUAGGUUUUGAAUAAAUUAAUGCAUGAAUUCAUGUAUGUGUUUUAAUGACAUAUACAAAUUCAUAUAAAUGUUAGUGAAUCUAGACAGGUAAGGUAAGAGAGAAGUUUAAAUGACUUAUAGUGUGUAACAAGCGUGUUGGGAGUACGUAUAGGUCCCGGUAUAUGCGAAUUUCUGUACCUUUUUAUCUUAUGUAUUUAUAUGGUCCUAUUAAGAAGUGUCUUUUGUUCGUAUGCGUCGCAGUAGUUGGCCCAUUGUAAUCGGCUAGAUGGAUCCUGUAAAUUGUUAAUGAUGUACAGUGUAUAUAUGAAGAAAAUAAGAUUAAUUUCAACUGA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
60.77%
ME_num:
MEP:
23.17%
HE_num:
HEP:
15.85%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.84
Avg Expression:
13.75
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 8.14202848037569 | 4.07235316183046e-10 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | 4.35946188273143 | 0.0183359090869771 |
| 3 | Nipponbare // shoot // No_DIS;Fr13_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -2.62535667225403 | 5.75886647308841e-05 |
| 4 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS256 | -2.67620959494139 | 0.00709970244355621 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 5.01510538020842 | 0.000858700598674758 |
| 6 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_L8 | -4.98694875860254 | 0.000719680502094157 |
| 7 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12 | -2.67071961144642 | 0.000285444615051681 |
| 8 | Nipponbare // leaf // "wild_type,control,2"--/--Nipponbare // leaf // "wild_type,drought,2" | -5.86399547575693 | 8.91852781060276e-06 |
| 9 | Nipponbare // leaf // control--/--Nipponbare // leaf // drought | -5.86407066741472 | 8.9872914925753e-06 |
| 10 | Nipponbare // leaf // "wild_type,control,1"--/--Nipponbare // leaf // "wild_type,drought,1" | -5.86424642150909 | 8.94812558319782e-06 |
| 11 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | -5.60972333356921 | 1.01822195824108e-08 |
| 12 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | 2.93872376966285 | 0.0160421131263616 |
| 13 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | -3.87557786206719 | 6.52601777508546e-07 |