Chr:
Chr11
Start:
5814571
End:
5815724
Strand:
-
Ref_name:
LOC107279423
Sequence
(XR_001541269.2):
GCACACCAUCCCCUCCCCUCAAUUGCGCCAUCCCCCACGCAACCGCUAGCCACUCACGCCCUCAGCCCCUCCUCGCAUGUCUCACGCAGCGCCGCAAUCGUCGCCCGCCUUCCGCGCUGCACCGAUUCCCCGUCGCAGCCGUUCUCCUCCACCUUCUCAGGUGCCGCCGCCGCCAGGGAGGCGACGCCCCCACCGAACCACGCCGGGACACCGACGCCCACCUCGCUGAUCCCCUCCCAUCCUCCGCCGCUCCCCUCGCGCCGCCGCCGAUCUCCGCCUCGACGACCGGCUCUGCAUCGUCACUCCUCGCGAUCCCCUCCCGUCCUCCUCCGCGUAGCCCCUGAUCUCUCCUCGACCUUCUCCGUGCCGCCACCGAUCUCCGUUGCCGAAUCAACAUCGCACUCGCACGCCUGGCCAGUCUCCUCCGCGCCAUCAUCGAUCUCCGCCGACCGCUGCUUUUCCCGUCGGAAGCUCCAUUGCCACCCGCGCAGAUCAACCACUUCAAUGUCGGUCUUUCUUGUUACCUUGGCUCCUUGCGAUGGUAUGAUACAUGUUGUUACCUUGUAUUCCAUAUUUGCAGGUUAAUGAUGCUCCUAUUAAAGCCCUGAACUCCCCUGGCAUAUUUGCAAGUGUCCAAACUCAUCAGGGAUGUAAUUAUACUGUAUCAUGACUUUCAACACACAAAGACCUGCGAGCUAAGUGAAUGAGUUUAGAAAGUGAUGCAUAAAUGCAUUGAGAAUGCUAUACCAUCACAACAGACCAAGAACUGCAGCUGGUUUCCAAUUUUUGUGAGAAUCUAACUUUAAACAUCCUGCUGAUCCUUCACUUCCACCAUUUAUCUUGAUUGGCCCAGGAACUGGUUUUGCACCUUUGCAGAUCUCGACCACACAAUUCUCCCAACUCUGCUAUAUUUUUUUAUUAUAACGCAUUAUAGGGAUCUGCGCUCCAAUUUCAACAAAUAUUGUUUAUAUUUCUGCAUGUGCAGCUAAAAAUAUUAUGUUACAUGACUACAAUCUUAUGUUAACAUGACAUGUUCUUAUACAUUUAUACCUUAAUUUAUCCAUA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
30.69%
ME_num:
MEP:
53.66%
HE_num:
HEP:
15.45%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
anther
Tau :
0.88
Avg Expression:
20.40
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 1.97718901236001 | 0.00910899207971047 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | 1.72114667117832 | 0.00749996386467012 |
| 3 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS256 | -1.21616258865284 | 0.00130868572270024 |
| 4 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS279 | -1.34064235373217 | 0.000256465872965331 |
| 5 | WD20342 // leaf // none (control)--/--WD20342 // leaf // 0.5% Na2CO3 solution for 36h | -6.61300296735589 | 0.000312911305150131 |
| 6 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_L8 | -1.35197786968146 | 0.00548801761381651 |
| 7 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12 | -1.06697430552007 | 0.000314742516813469 |
| 8 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_RS105 | -1.29176232504997 | 0.000875231049303948 |
| 9 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7341 | -1.27316705535181 | 0.000237033175136055 |
| 10 | Nipponbare // leaf // "wild_type,control,2"--/--Nipponbare // leaf // "wild_type,drought,2" | 3.04330906855304 | 6.77760237471294e-07 |
| 11 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7342 | -1.06607228291334 | 0.00177678426256869 |
| 12 | Nipponbare // leaf // control--/--Nipponbare // leaf // drought | 3.04322140968744 | 6.22217543027145e-07 |
| 13 | Nipponbare // leaf // "wild_type,control,1"--/--Nipponbare // leaf // "wild_type,drought,1" | 3.04302732353238 | 6.844350172193e-07 |
| 14 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | -1.87564723161735 | 0.001927508432368 |
| 15 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | -1.41386169479174 | 0.00298955288034193 |
| 16 | Nipponbare // leaf // Drought;Long_Day--/--Nipponbare // leaf // Drought;Short_Day | 1.67981378440638 | 0.00857529026338682 |
| 17 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Watered;Short_Day | -2.1256490532049 | 0.000463836157993616 |
| 18 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | 1.54090096811388 | 0.0368609896898062 |
| 19 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | 1.95526532578379 | 2.45792097892673e-05 |