RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

OSA-LNC107279416

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr11

Start:

12729858

End:

12732455

Strand:

-

Ref_name:

LOC107279416

Sequence
(XR_001541241.2):

ACGUCAGCUUGCCGCCCCAGAGGUGGGCGGCAGGGUCUAUUUUUGCAAUUUUUUUUGGCCGAUAGAUUAUUUCUAUAAAUAUUUUAAAAAAAAAUCUAAAAAUGAAAAAAAUUCCUCUCCCAGUGCCGCCGCUUCCUAGGUAGCGCCGGCGACGCCGCCGCUCUCCCUAGCGCCGGCUACCACGCCCCACUCCGACGACCCCUCAAGCAGAUGUCCCGCAGCCGCGAAUCGGUUUCUUGGCUCCAUGCUUCUCUGCCCCUAAGCUAAACCUAACUUCCAACCUCCUCAAUCCUAGAUGCAGCCGCCGGCAAAACUCCGGCGAGUGGUUGAUGAGGACAUGGAUUAAACUAUUGGUCAACUAAUUAUAUACAUAUCCACUUGAUUCAGAUGCUAUGCUCUAACCUCUUCUCUAGAUUAUUUUCUGUAAGAACCUAUGGUUUUCUGUUCGGUAUCCUUAAUUCCUCAGUUCUAUUCUUUUUACUAAAACCUGCUGCUACAUGAUCUUCUAUAUUUUAAUCUGAAAUACCAGUGCUUCCUGAACUUGGUAUUAUAUACUAAAUGAAUGUUUCACCCAAAAUCCAAUUAUAUGGUGAUUCUAUACAAUCUAAAAUAUAUACUACUGUUUACUAAUUGAAUGAUGAUUUAUCUACAAUUGAACUAGCCUAAUUGACAGAGUUGUUAUAGUCCUUAUGCUUCAUGAUAAAUUAAAUCUGUGCUAGGGUCCAGAUACUAAUUUCCAAGUCCAUGGCUAAAUCUAAAAUCUGAUUUUAUCUAUAUGUCAAGAAUAUCAAUAUUUGUACUAUGGAUAAACAUCUGCAGUUACUAAAUUUGAUAAAGGUAUAAGACUGAUGAUAUGUUUAUAUACAUUCUACUGUUUCUUGAUUUAUCACCUGAGCACCUGUUUAUCUAUAGUAAAAUUUUAGUUACACAAACUGUUCUGAAGAUCAAACAAUUAAUAUGAAUAUUUUACUGAAUCUGAUAUGUUCUGGUUCAGCUUCUAAUGGAUGCAAAUGCAACACCCAAGGCCUACACAUACUAGUAUAUGCACAGAUCAACAUAGCUGCCAUCUCCUUAGGUUCAUUUUUCAGGUUUAAUGGAUAUGACUAAGUGCAUGCACACAACUCCUAAACAUACUAUUAUAUGCAUCAACCAAGAAUCAUGCCAUGAUGUGAUUUCCCUCUUAUUCUAAUUCUUUUUCCAGAUUACCUUAUUUGAUGGUCCUACUGUGGCUGUGGAAGACUAAUGACCGUGUGACUCUCCUCUGGUUCUACAGCUUCUUCUGAAAUUGGUCAGGGUGUUGCUCCUCCUCUUGUUUACUGCUGCCCUUCUGGAUCUGCUACUUGUUUCUCCUCUUUAAAUUGAAACCCCUUGCUCUACUUGAAACACAUGCAUCCCCUUUCUUUUCCUUCUACUCUCUCACCCUGGUUGUUUUUCUAUGGCUGCUGCUAUUGAGAUUUGGUGUAACUGUGGUGCCGGAUUACUAGCUACUGCUCUGCUAUUUCUCUCUUUUGAGGUGGUUUUGCAUACGAACUGCUUGCUGCUACUGCUGUUGCGGCUGAGGCUGCUGCGACAUGGCUGUGCUCUUGCUGUUGGUACUACUACUGCCACUGCUUGCUGCCUAUGCUGAUCUGCACGACCAAACCGAGGCUGGUUCACAGAUAGCUGAGUUAAUAUAUGUGGGAAUUUUUAGUGAAAGCUAAGUGACUCACCUACUUGGGCUAGAUGGCUGCUCCUAGCUUUGACUCCUAUGCAGUGCUUGAUCGUUGGAGUAUUGUAGGGUUUCACUAAUUUUUUUUAUUUAGAUAAAGUCUGAUAUAAUUAGGUACUUUUGCACUUGAGUCCCUCAGAGUCUCUAAUAUUGAAGGUUGCUUUGAGAUUAGGGACUGAUUUGUAAUUGCCCUAGAACUCAAGAGUUUUUCUGAAUAAAUAAUUAAUUGAAUCUUCGACUGAGAUGGUUCAGUUUAUGA

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

353

LEP:

71.75%

ME_num:

138

MEP:

28.05%

HE_num:

0

HEP:

0.0%


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Type:

MCR ()

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

anther

Tau :

0.78

Avg Expression:

2.98

Tip: OSA-LNC107279416 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA-2.261090414977480.0477322554514133
2Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA-2.667341082638370.0415818700993281
3Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN-2.303886878780010.0219324716656682
4Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA-3.123247836903840.00862628786857555