Chr:
Chr11
Start:
8301865
End:
8303795
Strand:
-
Ref_name:
LOC107279272
Sequence
(XR_001541105.2):
CCGGCUGGUUAAUAUAUUAAUAGCGGUUUCCUACACCAUAACCAACCCACCCAUCCACUUUUUUGACCCUAUUUUUCUAGAUCUACAGGAAGUGGCGAUCCGGCGGAGGAACCGGUAGCAUCGACCGCCGACGGCGCGAGUUCUUGAUGACGACCACCACCACCCUGGGCAAGGGAGUAUCCUAGGCGGCGGCAACGACGACUCGAUCGGAAGGCUUCUCCACUGCUUCAGCCAGCCCUCUAACUCCGGCGUCGGCUUCGUUGACGCAGAUCGGGAGGUGGCCAUUGAUGGGGAUCGACAGCGGCGAUGGCGCAAUACUCAGGAAAUUAGGAAUGCGUCGAUGGUGGUUGUUUGAUUUCUCAAGAAUGGGGCCAUCGACCAUGGCAUCCAAAGCAGAGUCUUGCAAGUGUGGAGGACAGUGCCUAGACACCGCCCCAUGAAGUGGCCCGCCCUGCAGGUCACGUGGGCACUCCGGCAAGGGCGACGAGCAGCGACGUACCCAAAAAUUCAUUAGGAAGUUGAUGCGCACAUCGCCGGCGGCCACGUCCAUGGUCUGCACUAGGAUGUGAGGAUGGAGGGCACGCGUUUGCUUGAGAUUAUCGUCUCUGCCUGUCGAUCUAGGUUCCAUCAAUGUGCUUCUUUGGAUUCCUUUCUGCCAUGUAGUGGUCAGGGACAGGGCCACGGCGGUUCUUGGUGCAUGCUGUGUUGUUGGGUUGUGGGUGUGGUUAAAUAUUCAGUGUUUUUUUCCCUCCAAUUGAUCAUAAACGAUCAGAAGUUUCCAUAUUGAUGGUGCAGAGACCUGUCAGGGAGCAUGCAUCUCAGCCUGCUGUAUUGUUAAUUACUUAAUUUCAGAUUGUGCUUUCUUUCCUAGUGUAUUGUUGUUGCUAGCCUCUUUAACAAUAGCACUAUUAUGGCCACAAAACACUAGUUCGAGCGCCCAUCCCUGACAAUCAGGUGUUUUCAACGUUGAUGUAGGUAGUAAUCUGUGCAACACUGCAACAUCCUUGCUUUGAUAGAUAGGUUAGCUGGUGGUCUCAUCCCUGAGAAUCAGGUGAUCGAUUCUUCUUAAGGACAUUAUUUCCAUCUUUUUUUUAGACAUACAUGGAUUGUUUAUUUUAUUUUCACACUACUAAUAUAGUUUUUUUUGCCAUUAUACUAUAGAUUUUACUGUUUUUGCUAAAUAAAAGCUUACAUUUUAAAGUACCUGUCCUAUAGAAAGAGAAACAUUGUUUUUUUACUAGUUGCUACAUGUAAAAUUGAUUUUGUGAUUGUAUAUCCUGAUAUUUUCUUGAUUUCCAGAUGUUAUCUUGAUUUUAGUUAGCUGUAGGUGAUCACAAUUGACAAUAUUGUUGCUAAUGAGGCGGCUGGAUCCACGGUGGAGCAAGUUGUUGCGACGGACUCCAACGCGGAUGCAGUUGGCAGCGGGAUUUGGCGUCGGCCGUGAGUCUCCAGCACCGACGCUGGUGGUGGUGUUUGGCGAGUUAGGAUGUAGUCAUUGGUUGUAACUUUCCUUUUUUCUAGAUCAAGAUGAAUAAUAUGUAUGCCUGUCUUCCAUGUGUAAAUUUCAUUGAUCAUGUGAUAGAACCAACAUACAAUUUUUAAGGAGGAAAGCUCACUCACACUGUAAUAUUGUAUUCAUGCCAUGGAGGCUAAUUGUAAAAAUUACUCUGAUCAUAUUAAAAAUGCGAAAGCACCUGGCAGUAAAAA
Sequence
(XR_001541106.2):
GGCUGGUUAAUAUAUUAAUAGCGGUUUCCUACACCAUAACCAACCCACCCAUCCACUUUUUUGACCCUAUUUUUCUAGAUCUACAGGAAGUGGCGAUCCGGCGGAGGAACCGGUAGCAUCGACCGCCGACGGCGCGAGUUCUUGAUGACGACCACCACCACCCUGGGCAAGGGAGUAUCCUAGGCGGCGGCAACGACGACUCGAUCGGAAGGCUUCUCCACUGCUUCAGCCAGCCCUCUAACUCCGGCGUCGGCUUCGUUGACGCAGAUCGGGAGGUGGCCAUUGAUGGGGAUCGACAGCGGCGAUGGCGCAAUACUCAGGAAAUUAGGAAUGCGUCGAUGGUGGUUGUUUGAUUUCUCAAGAAUGGGGCCAUCGACCAUGGCAUCCAAAGCAGAGUCUUGCAAGUGUGGAGGACAGUGCCUAGACACCGCCCCAUGAAGUGGCCCGCCCUGCAGGUCACGUGGGCACUCCGGCAAGGGCGACGAGCAGCGACGUACCCAAAAAUUCAUUAGGAAGUUGAUGCGCACAUCGCCGGCGGCCACGUCCAUGGUCUGCACUAGGAUGUGAGGAUGGAGGGCACGCGUUUGCUUGAGAUUAUCGUCUCUGCCUGUCGAUCUAGGGCCACGGCGGUUCUUGGUGCAUGCUGUGUUGUUGGGUUGUGGGUGUGGUUAAAUAUUCAGUGUUUUUUUCCCUCCAAUUGAUCAUAAACGAUCAGAAGUUUCCAUAUUGAUGGUGCAGAGACCUGUCAGGGAGCAUGCAUCUCAGCCUGCUGUAUUGUUAAUUACUUAAUUUCAGAUUGUGCUUUCUUUCCUAGUGUAUUGUUGUUGCUAGCCUCUUUAACAAUAGCACUAUUAUGGCCACAAAACACUAGUUCGAGCGCCCAUCCCUGACAAUCAGGUGUUUUCAACGUUGAUGUAGGUAGUAAUCUGUGCAACACUGCAACAUCCUUGCUUUGAUAGAUAGGUUAGCUGGUGGUCUCAUCCCUGAGAAUCAGGUGAUCGAUUCUUCUUAAGGACAUUAUUUCCAUCUUUUUUUUAGACAUACAUGGAUUGUUUAUUUUAUUUUCACACUACUAAUAUAGUUUUUUUUGCCAUUAUACUAUAGAUUUUACUGUUUUUGCUAAAUAAAAGCUUACAUUUUAAAGUACCUGUCCUAUAGAAAGAGAAACAUUGUUUUUUUACUAGUUGCUACAUGUAAAAUUGAUUUUGUGAUUGUAUAUCCUGAUAUUUUCUUGAUUUCCAGAUGUUAUCUUGAUUUUAGUUAGCUGUAGGUGAUCACAAUUGACAAUAUUGUUGCUAAUGAGGCGGCUGGAUCCACGGUGGAGCAAGUUGUUGCGACGGACUCCAACGCGGAUGCAGUUGGCAGCGGGAUUUGGCGUCGGCCGUGAGUCUCCAGCACCGACGCUGGUGGUGGUGUUUGGCGAGUUAGGAUGUAGUCAUUGGUUGUAACUUUCCUUUUUUCUAGAUCAAGAUGAAUAAUAUGUAUGCCUGUCUUCCAUGUGUAAAUUUCAUUGAUCAUGUGAUAGAACCAACAUACAAUUUUUAAGGAGGAAAGCUCACUCACACUGUAAUAUUGUAUUCAUGCCAUGGAGGCUAAUUGUAAAAAUUACUCUGAUCAUAUUAAAAAUGCGAAAGCACCUGGCAGUAAAAA
Sequence
(XR_003239581.1):
GGUUAAUAUAUUAAUAGCGGUUUCCUACACCAUAACCAACCCACCCAUCCACUUUUUUGACCCUAUUUUUCUAGAUCUACAGGAAGUGGCGAUCCGGCGGAGGAACCGGUAGCAUCGACCGCCGACGGCGCGAGUUCUUGAUGACGACCACCACCACCCUGGGCAAGGGAGUAUCCUAGGCGGCGGCAACGACGACUCGAUCGGAAGGCUUCUCCACUGCUUCAGCCAGCCCUCUAACUCCGGCGUCGGCUUCGUUGACGCAGAUCGGGAGGUGGCCAUUGAUGGGGAUCGACAGCGGCGAUGGCGCAAUACUCAGGAAAUUAGGAAUGCGUCGAUGGUGGUUGUUUGAUUUCUCAAGAAUGGGGCCAUCGACCAUGGCAUCCAAAGCAGAGUCUUGCAAGUGUGGAGGACAGUGCCUAGACACCGCCCCAUGAAGUGGCCCGCCCUGCAGGUCACGUGGGCACUCCGGCAAGGGCGACGAGCAGCGACGUACCCAAAAAUUCAUUAGGAAGUUGAUGCGCACAUCGCCGGCGGCCACGUCCAUGGUCUGCACUAGGAUGUGAGGAUGGAGGGCACGCGUUUGCUUGAGAUUAUCGUCUCUGCCUGUCGAUCUAGGUUCCAUCAAUGUGCUUCUUUGGAUUCCUUUCUGCCAUGUAGUGGUCAGGGACAGGUUAUUUUUCCUGCUUGGUCAUAGAGGGUCUCGUCUUAUUGAUAAUUGAUGCAUUCUUGUGUUCUUGCUUCUGCCUGUUCAUGGAGGUUCUUUUGUUUUAUUGAUGCAGGGCCACGGCGGUUCUUGGUGCAUGCUGUGUUGUUGGGUUGUGGGUGUGGUUAAAUAUUCAGUGUUUUUUUCCCUCCAAUUGAUCAUAAACGAUCAGAAGUUUCCAUAUUGAUGGUGCAGAGACCUGUCAGGGAGCAUGCAUCUCAGCCUGCUGUAUUGUUAAUUACUUAAUUUCAGAUUGUGCUUUCUUUCCUAGUGUAUUGUUGUUGCUAGCCUCUUUAACAAUAGCACUAUUAUGGCCACAAAACACUAGUUCGAGCGCCCAUCCCUGACAAUCAGGUGUUUUCAACGUUGAUGUAGGUAGUAAUCUGUGCAACACUGCAACAUCCUUGCUUUGAUAGAUAGGUUAGCUGGUGGUCUCAUCCCUGAGAAUCAGGUGAUCGAUUCUUCUUAAGGACAUUAUUUCCAUCUUUUUUUUAGACAUACAUGGAUUGUUUAUUUUAUUUUCACACUACUAAUAUAGUUUUUUUUGCCAUUAUACUAUAGAUUUUACUGUUUUUGCUAAAUAAAAGCUUACAUUUUAAAGUACCUGUCCUAUAGAAAGAGAAACAUUGUUUUUUUACUAGUUGCUACAUGUAAAAUUGAUUUUGUGAUUGUAUAUCCUGAUAUUUUCUUGAUUUCCAGAUGUUAUCUUGAUUUUAGUUAGCUGUAGGUGAUCACAAUUGACAAUAUUGUUGCUAAUGAGGCGGCUGGAUCCACGGUGGAGCAAGUUGUUGCGACGGACUCCAACGCGGAUGCAGUUGGCAGCGGGAUUUGGCGUCGGCCGUGAGUCUCCAGCACCGACGCUGGUGGUGGUGUUUGGCGAGUUAGGAUGUAGUCAUUGGUUGUAACUUUCCUUUUUUCUAGAUCAAGAUGAAUAAUAUGUAUGCCUGUCUUCCAUGUGUAAAUUUCAUUGAUCAUGUGAUAGAACCAACAUACAAUUUUUAAGGAGGAAAGCUCACUCACACUGUAAUAUUGUAUUCAUGCCAUGGAGGCUAAUUGUAAAAAUUACUCUGAUCAUAUUAAAAAUGCGAAAGCACCUGGCAGUAAAAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
21.14%
ME_num:
MEP:
44.31%
HE_num:
HEP:
34.35%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
caryopsis
Tau :
0.71
Avg Expression:
19.73
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 2.0112202095873 | 4.40097115281441e-12 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | 2.07125034437722 | 3.41668104972771e-13 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 2.23610009513654 | 1.90946186856723e-17 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 1.50513145320951 | 7.85715934998752e-05 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 2.36554416163744 | 4.38583581986707e-17 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | 1.56583791989732 | 6.29595326320907e-06 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | 2.14289383970736 | 1.89833386482409e-13 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 1.49823491574492 | 5.1777564463028e-07 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 1.92512435342303 | 2.02979149479831e-12 |
| 10 | Nipponbare // shoot // "Control,22C for 10 min"--/--Nipponbare // shoot // "Heat,42C for 10 min" | -1.10228445681971 | 0.028437542371318 |
| 11 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Watered;Short_Day | -1.78052795110237 | 0.0110229840914945 |
| 12 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | 1.42351781966637 | 1.79680865937682e-05 |
| 13 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | 1.66532959790307 | 1.05539510971508e-08 |