Chr:
Chr11
Start:
16453421
End:
16462183
Strand:
-
Ref_name:
LOC107279267
Sequence
(XR_001541078.2):
UUGUACGAAGAUCUAAGCUUAGUAGACACAGUUUUAAUUUCUUCCCGAUAGCAUAUCAGUAUGAAGAGUGCCCUUUUACUCGUAAUCCUGCUGACGACGACGGCGCUUGCUACCGGCGUCCUCGCAGCGUAUAAUGACCCGCUUCAGCCAGACUACCUCCUACCUUCGGAUGGCAAGCCAGGUUACCCAUACACGAGCGGAGAUACGCGAUGGAGAAAAACCCCACCAGCGAAAACUAUAACCGGGGAGGAGUUGCGAAGAUCGGUUAUCGCAAGCGGCGGCUGCGAUAAUCAUAUUCACAUACGGCCUCCUCCCGCAAUAAUCUCAGGAGAGUGUCGCCGCCUGCGAAGAUUGGUUUUGGCAGGCGCCCGUUAUGUGUUCCGCCUGCGAAAAUAGCGCUGGAUAGUCAUCUUCCUCCCCAAGCUCUAUUCAUUCUAUCCGGUGUUUCUCUCUCCUAAAGCUCAGAGAAGAUGACCCCAAGAAGGCCGCUGAACUAGCCAGAAAAAAAUACUUUCCAAUUGAUGGCUGCCAGGAAAAAUACCAACAUGGGAAAGCAAUAUGGCUGGAUUUUGCACUUGAUGACGGUCCAUGGGAGAUGACAAGGUUAUAUAAAUGGUACAUGGAUGCCAGCAAGAAAGGCCUAAGUCAUAUAACAAUUCGAUCACCGCAUGAUGCUUUCGCCGGCGACGGUUACUUCUGGCUAGAUUUUGAAGAUCUCCACGCCAUAUAUCGUCAGGAAAAGAUUGACGUCAACUAUAUCGGUGCUUAGUGCAUGAAUGCAUGGAUGCUAAGAAGGAAAAAGAACCUAUCGGAUUCCUGCAUCCAACUAGGAUCUGUCAAACACAGCAUACCGUGAGGCUAUCACCAAGGUCGGAGCAGCUGAAAGACAAGACUCCCGAAUAGAUAGCUGAAUAUAAGAAGGGCUUGCACAAGCAGAAAAUAAUUACUGUUGCACAGUAUAUUGGACGAGCCUUCUUGCACUUUCAAAAUAAGAGAGUCGUCCUAACCGUUUAUAAUUUUAAGUCUGGUAAAUUUAUCUUCUACAUAUGUGUCUUGUUUUAUCCGUGACUAACUGCACUGUCAUUAAUAUAUACAUUAAUAUAUAGCGAUCAUUAUAUCUGUUUAAUCAUCUACCCGAAGCACGGAAUCGUGAUAGUCUUGGACCCUCUCGAUUACCGUCACGAGUCAUACAAAGAAUUUCUAAUAAUCUUACAAUAUACGUACAACUACUACAAGUUCAUGGGUGGAGAACAGAUUCGAACAAGUGAGAAGCUGCUAGUACAUACAUAUUGGCCGUGUCAUAAGCAACCUAGAGGCACUGUCCUAUACGGGUAUUACGCGUGCGAAUUCCUCAGGGUUAAUGGAAGGUACAGGGUUAACGCAAAGAAUUUGCCAAGAAUAGAACGUCGAACAAGCUUUGACAAUACAAGCAUCACAAAUAUCCAGCACGAUCUCUUCCACUUCAUCCACCGUGAGUAUUGUCAUGUGGAAGGAAAGUUCUUCAACCCAGAGGGUGCCCUAGCUACAAGUGAUGAAUACAAGAAUCUUCGGGAGUGUAGCAAUGCUAUGCCAUAAUGUAAUUAGAUAACGUAUUUCAAGUGACAAUAUGUAAAAAAUAUUGUAAUAUUUUGAUGACACUUUUCACUUAUGCAAUAUAUGUAGAUUUCUCAGUAUCAAAAGCUUGUUUUUUACUAAUAUUAUUUAUGCAUCAAUUAUAAUUAAAUAAUUGAAAAAUAAUUUAUGAGCAAAUUAUUAUUGUAUCAAAUUUCAAAUUGUUUACCUAUCCUCGCAGACGGCAUUUCAUUGUUUUUGCAGUCAGCAAUUCUCUACUUUCGCAGAUGGCCCAUCUAUCUCCACUCCGUCUGGGAAAAUGAUCUUCCCAGGCGGACCACCAACCCGUCUGCGAACAUCAACGAUCUUCACAGGCGUUGGGCUGCCGGCCGUCCGCCUGAAAAGACGCGUUCUCCCUGGGCGAAAAUGCUUUUUCUAAGUAGUGGCAGCUGCCGGCGAGGGAAGCUCGCUCCGGCGAGACAGCCAGACGCCACGCCCCUUCUUUUCCCCACAACUCCAAUCGCCUCCAAACCUCAGAUCCGACGGCACCAGCUCUAUCAACGCGUGACGCGACAGCGGAGCCGCGACUCGAAGCUAACUGAGCGAGCUCGCCUCGCCGGCGGUUGAUUUCAUCUUGGUCUGGCUCGUCGUCUUCGUGGGGUACGGUCCAGUUUCAGCCUCCAGGGCAUCGUGACCUCCUCCUAUUUCCCAUAUGCACUGAUCGCACUUUAAAUUGUAGCAGGUCAAUGUAAAAAGCUUACUACAGUUUGCCUGGCCCAGUUAAUAUAACACUGUUCUAAAAAAAAAAGUUAACAUAACACUAAUGUCUACGUGCAAGUCUUAUGGUUACGGUGUUUCAAGGCAUGUGCUUCAUUUACAUUGACACAGCUGACAAUAAUAAAUUUGCAAAAUUAUUUGUAAGCUUAUUCUGUAGUUUUCUUACCGAACCUUAAUUUGGUAUGCUCUAUUGUUUACUUGUCCAGAAACCUAAUGCACCGCUGCGUGGUGUUCCUGUUGCCCGUGGGGAGUGAAAAGUUUUCUUUCACUCUUCCCUUUUUUUUAAGGUCACUACUUGUUUUAAUGUAAAACAACCGAGUGCGCGUACUCUCACCGGGGAACACACAGGA
Sequence
(XR_001541079.2):
UUGUACGAAGAUCUAAGCUUAGUAGACACAGUUUUAAUUUCUUCCCGAUAGCAUAUCAGUAUGAAGAGUGCCCUUUUACUCGUAAUCCUGCUGACGACGACGGCGCUUGCUACCGGCGUCCUCGCAGCGUAUAAUGACCCGCUUCAGCCAGACUACCUCCUACCUUCGGAUGGCAAGCCAGGUUACCCAUACACGAGCGGAGAUACGCGAUGGAGAAAAACCCCACCAGCGAAAACUAUAACCGGGGAGGAGUUGCGAAGAUCGGUUAUCGCAAGCGGCGGCUGCGAUAAUCAUAUUCACAUACGGCCUCCUCCCGCAAUAAUCUCAGGAGAGUGUCGCCGCCUGCGAAGAUUGGUUUUGGCAGGCGCCCGUUAUGUGUUCCGCCUGCGAAAAUAGCGCUGGAUAGUCAUCUUCCUCCCCAAGCUCUAUUCAUUCUAUCCGGUGUUUCUCUCUCCUAAAGCUCAGAGAAGAUGACCCCAAGAAGGCCGCUGAACUAGCCAGAAAAAAAUACUUUCCAAUUGAUGGCUGCCAGGAAAAAUACCAACAUGGGAAAGCAAUAUGGCUGGAUUUUGCACUUGAUGACGGUCCAUGGGAGAUGACAAGGUUAUAUAAAUGGUACAUGGAUGCCAGCAAGAAAGGCCUAAGUCAUAUAACAAUUCGAUCACCGCAUGAUGCUUUCGCCGGCGACGGUUACUUCUGGCUAGAUUUUGAAGAUCUCCACGCCAUAUAUCGUCAGGAAAAGAUUGACGUCAACUAUAUCGGUGCUUAGUGCAUGAAUGCAUGGAUGCUAAGAAGGAAAAAGAACCUAUCGGAUUCCUGCAUCCAACUAGGAUCUGUCAAACACAGCAUACCGUGAGGCUAUCACCAAGGUCGGAGCAGCUGAAAGACAAGACUCCCGAAUAGAUAGCUGAAUAUAAGAAGGGCUUGCACAAGCAGAAAAUAAUUACUGUUGCACAGUAUAUUGGACGAGCCUUCUUGCACUUUCAAAAUAAGAGAGUCGUCCUAACCGUUUAUAAUUUUAAGUCUGCGAUCAUUAUAUCUGUUUAAUCAUCUACCCGAAGCACGGAAUCGUGAUAGUCUUGGACCCUCUCGAUUACCGUCACGAGUCAUACAAAGAAUUUCUAAUAAUCUUACAAUAUACGUACAACUACUACAAGUUCAUGGGUGGAGAACAGAUUCGAACAAGUGAGAAGCUGCUAGUACAUACAUAUUGGCCGUGUCAUAAGCAACCUAGAGGCACUGUCCUAUACGGGUAUUACGCGUGCGAAUUCCUCAGGGUUAAUGGAAGGUACAGGGUUAACGCAAAGAAUUUGCCAAGAAUAGAACGUCGAACAAGCUUUGACAAUACAAGCAUCACAAAUAUCCAGCACGAUCUCUUCCACUUCAUCCACCGUGAGUAUUGUCAUGUGGAAGGAAAGUUCUUCAACCCAGAGGGUGCCCUAGCUACAAGUGAUGAAUACAAGAAUCUUCGGGAGUGUAGCAAUGCUAUGCCAUAAUGUAAUUAGAUAACGUAUUUCAAGUGACAAUAUGUAAAAAAUAUUGUAAUAUUUUGAUGACACUUUUCACUUAUGCAAUAUAUGUAGAUUUCUCAGUAUCAAAAGCUUGUUUUUUACUAAUAUUAUUUAUGCAUCAAUUAUAAUUAAAUAAUUGAAAAAUAAUUUAUGAGCAAAUUAUUAUUGUAUCAAAUUUCAAAUUGUUUACCUAUCCUCGCAGACGGCAUUUCAUUGUUUUUGCAGUCAGCAAUUCUCUACUUUCGCAGAUGGCCCAUCUAUCUCCACUCCGUCUGGGAAAAUGAUCUUCCCAGGCGGACCACCAACCCGUCUGCGAACAUCAACGAUCUUCACAGGCGUUGGGCUGCCGGCCGUCCGCCUGAAAAGACGCGUUCUCCCUGGGCGAAAAUGCUUUUUCUAAGUAGUGGCAGCUGCCGGCGAGGGAAGCUCGCUCCGGCGAGACAGCCAGACGCCACGCCCCUUCUUUUCCCCACAACUCCAAUCGCCUCCAAACCUCAGAUCCGACGGCACCAGCUCUAUCAACGCGUGACGCGACAGCGGAGCCGCGACUCGAAGCUAACUGAGCGAGCUCGCCUCGCCGGCGGUUGAUUUCAUCUUGGUCUGGCUCGUCGUCUUCGUGGGGUACGGUCCAGUUUCAGCCUCCAGGGCAUCGUGACCUCCUCCUAUUUCCCAUAUGCACUGAUCGCACUUUAAAUUGUAGCAGGUCAAUGUAAAAAGCUUACUACAGUUUGCCUGGCCCAGUUAAUAUAACACUGUUCUAAAAAAAAAAGUUAACAUAACACUAAUGUCUACGUGCAAGUCUUAUGGUUACGGUGUUUCAAGGCAUGUGCUUCAUUUACAUUGACACAGCUGACAAUAAUAAAUUUGCAAAAUUAUUUGUAAGCUUAUUCUGUAGUUUUCUUACCGAACCUUAAUUUGGUAUGCUCUAUUGUUUACUUGUCCAGAAACCUAAUGCACCGCUGCGUGGUGUUCCUGUUGCCCGUGGGGAGUGAAAAGUUUUCUUUCACUCUUCCCUUUUUUUUAAGGUCACUACUUGUUUUAAUGUAAAACAACCGAGUGCGCGUACUCUCACCGGGGAACACACAGGAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
64.23%
ME_num:
MEP:
33.74%
HE_num:
HEP:
1.83%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
crown
Tau :
0.82
Avg Expression:
1.78
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Nipponbare // shoot // No_DIS;Fr13_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -3.10590270641881 | 7.1215079523373e-07 |
| 2 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | 2.12068083227931 | 0.0149632615496783 |
| 3 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 1h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 1h50 min" | -2.50563799295282 | 0.00840348203069739 |
| 4 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 9h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 9h50 min" | -3.84151058034743 | 1.33657976086815e-07 |
| 5 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS256 | -2.13801467019792 | 0.0134109617154345 |
| 6 | IR64 // leaf // ethanol solvent (untreated control)--/--IR64 // leaf // gibberellic acid (GA) | -1.60581297349511 | 0.0222879674671522 |
| 7 | Nipponbare // leaf // "wild_type,control,2"--/--Nipponbare // leaf // "wild_type,drought,2" | -3.91033522903066 | 0.00058186329989773 |
| 8 | Nipponbare // leaf // control--/--Nipponbare // leaf // drought | -3.91040461913369 | 0.000587846699451168 |
| 9 | Nipponbare // leaf // "wild_type,control,1"--/--Nipponbare // leaf // "wild_type,drought,1" | -3.91060427186052 | 0.000584097100966929 |
| 10 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | -4.64497691520651 | 0.0137234544485595 |
| 11 | Nipponbare // shoot // No_DIS;_mock_inoculated--/--Nipponbare // shoot // No_DIS;Fr13_inoculated | 5.65341037464818 | 4.58722353533948e-25 |
| 12 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | -5.2078121710615 | 1.89343329882163e-06 |