Chr:
Chr11
Start:
4682980
End:
4685252
Strand:
-
Ref_name:
LOC107279263
Sequence
(XR_001541032.2):
UGAAAAGGUCAUCAACAUCAAAAUUGUAUAACUCAUCAAUAUGUAUAACUUUUAUUUUGGUCAUUUCUUCAUCCGAUAAAGUGAUAGUAAUAUUAUUCACAAAAUUUACAUAUUUCUUAUAUGGUUUUCAAGUAUUUAAUAUUAUAUUUGCAAAUUGCGACGAAUUGCUAUAACGUCACAGGUUUUGGGCCGGUUUAUGAAGAAAUCGAUAAACAGUAUUAUGGGCCUUGUAUCCAUAGUUGCAUAUCCGUGACGAUCUCUGAAAACAUCAAGAAAAUUUCAUCAAAUUUCGUCACAGAUUAAAUAGAUUCUUGUAGUAACUUCACGUUUGGAAAUGGGUUAAUUCAAUUAUGCCAUUGCAAAUAUAUCAUUUUAGAAAAAUACCAUUACAAUUCGUUUAUUUAUAUUUGUGCAAUUGUAAUUUUACAAUUAGAAUCGUGCCACUACCGUCAAGUUUUUCAUCCAUCUCUUUCCUCCUUCGUUUUCUUCCUUCUCUCUUCCCAUCUUCAUUCUUACCCACCACCAUCGUCCAUCCAUCCAUGGCCGCUGCGAGCAUUGACGGUGCCUGCCGCUGUGAGCUUUUACAGCGCAAGCACCAGGGCACUCGGCAUGCACGCGGAAGCGACAAUGGUGGAGCAAGUGGCAGCGGCGACGAUGGUGGAGCAAGAAGCGGCAACGGUAGAUCUGGUGACGAGGUGCUGUUGGAAUAAAUGGGCUAGGCCCAAUUUAAUUCAAUUAAAAUCUCAAGGGCCCACAAUUAAUGCUAGGGACAAUAAUACCACCUUAGAGAUUAAAAGUGGAGUAUCUCAACUUAAUUCCUUGAUUGAUUACAUUGUUACUGCGGUAACGGAGGCGGAAUCUCAACUUAAUUCUCGUCCACUUCCCCUUCCCUCCUGCGCAUUAUAAGAAUCACAGAGAUGAGACGAGAGGAGGUUUACUCCACGUCCGAUCUCGUUUACUCCUCAUCGUUUACUCUGCGGUGGUUCAUCUUCCAUCUGUUCCUGUGCUGCUUCUGUACUCCUCGAUUCUGAUCGCGUGCACACAAGUGAUCGGGACGAGCAGGGCCUCCGGAACCACGCCUUUGCCUAAGUACCUAUACGGGUAGGCGGGCGAUCAGUUUUUUGGGGAGUGCUUUCGCACGACUGCUCGCGUUUCAUCUUCUUUUCAUGUUCGUCGUCGGCGUCAACUUCAACCAUGUCUACGGAGGCAACAACACCACGAAUAUCAACACCAGCGGAGGCAGUAUUGCCUCAAACACCAGCGGAGGGCCAUUCUCAGGGUGCUCCAGCACCAACACUCAUUUAUGACGCCGCCAUCAUCAUGGAUCCUCGUCGGCUCGUCGUUGCUUGUCUGCUCAUGAUCAGUGACGCUAUCCUGGCCGCACUGCCGCAGGCCGCCUCGCGUGGUGCUGGCGCUAAUCGCAGGGACGAGCAAAGGUUGCCGAGCUCGCCAGCUGCUUGCUACCUGCAAAUAGAGUGAAAAAAAAAGGUGCAAAUAGAGAAGGAAAAAGAAACCGAGUUCUGAAAUUUUAGGAGGCGCAGAUGCCGGAGAUGGUCACGCUGCUGACGGUGACAUAGAAACGCACCCUCCCUGCUGGUUGCCUCAUUUGAAACAAGGUGGAGAGAGAUGGGAAGGAAAAAGAUGGGAGGAUGAAGGAAGAUGGAAAUGACAUGUGGGUCCCACGCUCCCGUGUGCUCAAAACACACGGUAACGACGUUACCAGGUGCUAGUGCACGGGAACAGCUACUCGGCGGCUUCGUCAGUUUACCGUGCGCACUUCCCGGGUGUUUUACGAUUAUGCGCACGGGAAGGCCAAAACACAUACCGUGUGUGAGCACACGGUAAGGCUGCCGUGCGUAGCUGGACUCGUGUAACGGAGCUCCUAACGGACCGGUGGCUUACCGAGUGUCCUUCACACACGGUAACAUUUGGUGUGUUACCGUGUUUCAUUCACCCGGUAACAUGUGGUGCGUUACCGUGUUUGAAGCACCCGGUAAGAGAACAUGUGGUGAUAAAAAAAUAUAUAUGCUAUUUGCAAUUUGUUUACUA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
19.31%
ME_num:
MEP:
77.64%
HE_num:
HEP:
2.85%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot_apical_meristem
Tau :
0.71
Avg Expression:
4.45
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 1.70343485296772 | 0.0329377268802579 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 1.67941768667628 | 0.0245014262021922 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | 1.9115391601355 | 0.0145211814516948 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | 1.78301146553636 | 0.0143072317126047 |
| 5 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -1.87467308396946 | 0.000837877985004122 |
| 6 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12 | -1.28155755302248 | 0.00062962623634178 |
| 7 | Nipponbare // leaf // "wild_type,control,2"--/--Nipponbare // leaf // "wild_type,drought,2" | -1.87038842693661 | 0.0165324804345921 |
| 8 | Nipponbare // leaf // control--/--Nipponbare // leaf // drought | -1.87050778580029 | 0.0167520015717441 |
| 9 | Nipponbare // leaf // "wild_type,control,1"--/--Nipponbare // leaf // "wild_type,drought,1" | -1.87060920814923 | 0.0165795970764882 |
| 10 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | -1.47015113940896 | 1.98412315671881e-05 |
| 11 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | 1.64518398447961 | 0.0386305218496487 |
| 12 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | 1.44476588648222 | 0.0377874537678434 |