Chr:
Chr10
Start:
16906351
End:
16910997
Strand:
+
Ref_name:
LOC107279235
Sequence
(XR_001540856.2):
UUGCCUUGGAGAGCCCCCCUGAGAUGGAAUAUUGAAUCGAUCGAUCCAUCCUCCCCCUCUCCCUCUCGCUCUGCUCGCCGCCGCCGGGCUCGACCCUCCCUCCGGCGAGCGGUGGCGGAUCUGGCGGCCGUGAAAGGGGGCGGCAGUCUGGUGGCUAGGUGGGGUUUCCGCGACACGCGUUUCAGUUCUGACGUCGAGAUCGCGGAGAAGCAUGGUGAUCCACGACAUGGCCCACCGCACAAAAUGCUCUGCCAUCCCGGAAGACAGUGUGUACGAGAUAUGUCUCCAUACCUAUGACCCGGCAGAUUAUGCUCGCAUGGGAGCAGUGUGCAAGGAAUGAAGCUCAACUCGUCCCCUAUGGCCUCACCUGCCAUUACUUGUUGCUCCCUGUGGUAUUCAGCCGUCUACUCUGAGCGCUCGAUGCGUAGUCACAAGGAAAACCAUCACCCUUCCUGCAAGCUGGAGCUUUUCUCGUAUGACCGCUGCAUCGACGAGUGGCCAUGUCCUCCUGAUGAUUCCAGUAGCUGGCGACAUCGAUCAAUACUGCUUCAUGUGGAUUACUCACAGCUGAUUGGAUACUCACAGCAAACCCUCCCUCGGUUGUCAGAGUAUGGCAAGAUGCAGCAUGGCAAUACCAGUUUCAGAGUUUGUGAGGAUGGGAGAGUUCUGGUUUGCAGGUUCUACAGUGAGGGCAUUAGUAGUGCGUCACCUAUUUUACGGAGCUAGGGCUGCCACAUAGGACGAAGACACAAGAAGAAUAAUAUUUAUCACAAGUCUCACAUUGCUAUGUAGCCUCAAAUAGGAGCCACACAAAAAAAAAUCAUUUCUCUCUCCCAUAUCCUCAGUCUGAUCCCCACCCAGUCCGCCCGCGCGCUUCUCCAUCUCCGCCCGCACGCCUCCCCUAUUCUCCGGCCGCCGCGCCUCCCCUUCCUCCUCCUGCGCGGCCGGUGAGAUUCCCCUUUGCGCGGCGCGGCGAACGAUGGCGGCGGCGUGAAGCGGCUCGGCGGACGGUGACGAUGGCACGGACGGCCUGAGCAGCAACGCCGACACCGGGCGGCCCAUGCGGCGACGACGCCAGCGGCAGAUCAGGAGCUCGACGGUGCUGGUCGGUGGGGCGGCUCGAGCGCCUCCCCUCCUCCUCCUCUUCUGGCCGCCGCAGAUCGAGGCGGCGCGGCAGCUCGAGCGCCUCCCCUCCUCCUCUUCCGGCCGGAUCCCCAUCCAUUCGGUGGCAGCAGCGUUGAAUCGGCGGGAGCGAGCUCGGCGAGGGACGGAGUGCGUGGAUCUGGCGGUGGGGGCCGAUGAGCUCGGCGAAGGACGGUGGACGCGGGUCGGGUGGUGAGGGACGACGGACGCGGGUUGGGCGGCGAGGGACAGCGGAGCUCCUUUCUCCCCGUCGGCGGCUGGUGAGCUUCCCCUUUGCGCCCGACAGUCCUCCUUCCUCCUCUGGCCGACGAGAUCGGCGGCGUGGAGCACAAGGAUGACCGUUCUCUCUCCUCCCUCUCUCAUCCUUGACGCGCCGUGGGUCCUACCUACGACCGAGGAACCCGUAGCCAAAGUUUGCUACGCGUUCCUAGGGAGGCCGCGCGGAUAGACGACGUGGAACGGAAUAUUCGUAUUUUUGUGCUGAGGCCAAAUGCCACAGAGAUGCACUGUGAAUGACCUGAGGAGGAUCGUCCGGGUCUCUAUGCUGCUGCACAAUAACCCCACAUGGCUGCAUACUCAGAUUAUUUGGCCUGACCUGGCCCUGUUUAGUUCCCAAAAACUUUUCACAAAAACAUCACAUCGAAUCUUUGGACACAUGUAUAGAGCAUUAAAUAUAGAUAAAAAGAAAAACUAAUUGCACAAUUUGUAUGUAAAUGGCGAGACGAAUCUUUUGAGCCUAAUUAGUCCAUGAUUAGCCAUAAGUGUUACAGUAACCUACAUGUGCUAAUGGCAGUUUAAUUAGGCUCAAAAAGUUCGUCUCGUAGUUUUCAGGCGAGUUAUGAAAUUAGUUUUUCCAUUCAUGUCUAAAAACCUCUUCCGACAUCCAGUUAAAUGUCUGAUGUAACACCUAAAAUUUUUUAUUUCACCAA
Sequence
(XR_001540857.2):
AGAGCCCCCCUGAGAUGGAAUAUUGAAUCGAUCGAUCCAUCCUCCCCCUCUCCCUCUCGCUCUGCUCGCCGCCGCCGGGCUCGACCCUCCCUCCGGCGAGCGGUGGCGGAUCUGGCGGCCGUGAAAGGAUAUUUUACAUUUGGACACCAGGGGCGGCAGUCUGGUGGCUAGGUGGGGUUUCCGCGACACGCGUUUCAGUUCUGACGUCGAGAUCGCGGAGAAGCAUGGUGAUCCACGACAUGGCCCACCGCACAAAAUGCUCUGCCAUCCCGGAAGACAGUGUGUACGAGAUAUGUCUCCAUACCUAUGACCCGGCAGAUUAUGCUCGCAUGGGAGCAGUGUGCAAGGAAUGAAGCUCAACUCGUCCCCUAUGGCCUCACCUGCCAUUACUUGUUGCUCCCUGUGGUAUUCAGCCGUCUACUCUGAGCGCUCGAUGCGUAGUCACAAGGAAAACCAUCACCCUUCCUGCAAGCUGGAGCUUUUCUCGUAUGACCGCUGCAUCGACGAGUGGCCAUGUCCUCCUGAUGAUUCCAGUAGCUGGCGACAUCGAUCAAUACUGCUUCAUGUGGAUUACUCACAGCUGAUUGGAUACUCACAGCAAACCCUCCCUCGGUUGUCAGAGUAUGGCAAGAUGCAGCAUGGCAAUACCAGUUUCAGAGUUUGUGAGGAUGGGAGAGUUCUGGUUUGCAGGUUCUACAGUGAGGGCAUUAGUAGUGCGUCACCUAUUUUACGGAGCUAGGGCUGCCACAUAGGACGAAGACACAAGAAGAAUAAUAUUUAUCACAAGUCUCACAUUGCUAUGUAGCCUCAAAUAGGAGCCACACAAAAAAAAAUCAUUUCUCUCUCCCAUAUCCUCAGUCUGAUCCCCACCCAGUCCGCCCGCGCGCUUCUCCAUCUCCGCCCGCACGCCUCCCCUAUUCUCCGGCCGCCGCGCCUCCCCUUCCUCCUCCUGCGCGGCCGGUGAGAUUCCCCUUUGCGCGGCGCGGCGAACGAUGGCGGCGGCGUGAAGCGGCUCGGCGGACGGUGACGAUGGCACGGACGGCCUGAGCAGCAACGCCGACACCGGGCGGCCCAUGCGGCGACGACGCCAGCGGCAGAUCAGGAGCUCGACGGUGCUGGUCGGUGGGGCGGCUCGAGCGCCUCCCCUCCUCCUCCUCUUCUGGCCGCCGCAGAUCGAGGCGGCGCGGCAGCUCGAGCGCCUCCCCUCCUCCUCUUCCGGCCGGAUCCCCAUCCAUUCGGUGGCAGCAGCGUUGAAUCGGCGGGAGCGAGCUCGGCGAGGGACGGAGUGCGUGGAUCUGGCGGUGGGGGCCGAUGAGCUCGGCGAAGGACGGUGGACGCGGGUCGGGUGGUGAGGGACGACGGACGCGGGUUGGGCGGCGAGGGACAGCGGAGCUCCUUUCUCCCCGUCGGCGGCUGGUGAGCUUCCCCUUUGCGCCCGACAGUCCUCCUUCCUCCUCUGGCCGACGAGAUCGGCGGCGUGGAGCACAAGGAUGACCGUUCUCUCUCCUCCCUCUCUCAUCCUUGACGCGCCGUGGGUCCUACCUACGACCGAGGAACCCGUAGCCAAAGUUUGCUACGCGUUCCUAGGGAGGCCGCGCGGAUAGACGACGUGGAACGGAAUAUUCGUAUUUUUGUGCUGAGGCCAAAUGCCACAGAGAUGCACUGUGAAUGACCUGAGGAGGAUCGUCCGGGUCUCUAUGCUGCUGCACAAUAACCCCACAUGGCUGCAUACUCAGAUUAUUUGGCCUGACCUGGCCCUGUUUAGUUCCCAAAAACUUUUCACAAAAACAUCACAUCGAAUCUUUGGACACAUGUAUAGAGCAUUAAAUAUAGAUAAAAAGAAAAACUAAUUGCACAAUUUGUAUGUAAAUGGCGAGACGAAUCUUUUGAGCCUAAUUAGUCCAUGAUUAGCCAUAAGUGUUACAGUAACCUACAUGUGCUAAUGGCAGUUUAAUUAGGCUCAAAAAGUUCGUCUCGUAGUUUUCAGGCGAGUUAUGAAAUUAGUUUUUCCAUUCAUGUCUAAAAACCUCUUCCGACAUCCAGUUAAAUGUCUGAUGUAACACCUAAAAUUUUUUAUUUCACCAA
Sequence
(XR_001540858.2):
CGGCGGCAGCUGAUCUGCUGCCGCUGCAGCUUCCGCCUGUUGUUCACGGCCGCCUCCUGCCUCGGCCUCUUCCUCUCCCUUGCCUUGGAGAGCCCCCCUGAGAUGGAAUAUUGAAUCGAUCGAUCCAUCCUCCCCCUCUCCCUCUCGCUCUGCUCGCCGCCGCCGGGCUCGACCCUCCCUCCGGCGAGCGGUGGCGGAUCUGGCGGCCGUGAAAGGUCUGGUGGCUAGGUGGGGUUUCCGCGACACGCGUUUCAGUUCUGACGUCGAGAUCGCGGAGAAGCAUGGUGAUCCACGACAUGGCCCACCGCACAAAAUGCUCUGCCAUCCCGGAAGACAGUGUGUACGAGAUAUGUCUCCAUACCUAUGACCCGGCAGAUUAUGCUCGCAUGGGAGCAGUGUGCAAGGAAUGAAGCUCAACUCGUCCCCUAUGGCCUCACCUGCCAUUACUUGUUGCUCCCUGUGGUAUUCAGCCGUCUACUCUGAGCGCUCGAUGCGUAGUCACAAGGAAAACCAUCACCCUUCCUGCAAGCUGGAGCUUUUCUCGUAUGACCGCUGCAUCGACGAGUGGCCAUGUCCUCCUGAUGAUUCCAGUAGCUGGCGACAUCGAUCAAUACUGCUUCAUGUGGAUUACUCACAGCUGAUUGGAUACUCACAGCAAACCCUCCCUCGGUUGUCAGAGUAUGGCAAGAUGCAGCAUGGCAAUACCAGUUUCAGAGUUUGUGAGGAUGGGAGAGUUCUGGUUUGCAGGUUCUACAGUGAGGGCAUUAGUAGUGCGUCACCUAUUUUACGGAGCUAGGGCUGCCACAUAGGACGAAGACACAAGAAGAAUAAUAUUUAUCACAAGUCUCACAUUGCUAUGUAGCCUCAAAUAGGAGCCACACAAAAAAAAAUCAUUUCUCUCUCCCAUAUCCUCAGUCUGAUCCCCACCCAGUCCGCCCGCGCGCUUCUCCAUCUCCGCCCGCACGCCUCCCCUAUUCUCCGGCCGCCGCGCCUCCCCUUCCUCCUCCUGCGCGGCCGGUGAGAUUCCCCUUUGCGCGGCGCGGCGAACGAUGGCGGCGGCGUGAAGCGGCUCGGCGGACGGUGACGAUGGCACGGACGGCCUGAGCAGCAACGCCGACACCGGGCGGCCCAUGCGGCGACGACGCCAGCGGCAGAUCAGGAGCUCGACGGUGCUGGUCGGUGGGGCGGCUCGAGCGCCUCCCCUCCUCCUCCUCUUCUGGCCGCCGCAGAUCGAGGCGGCGCGGCAGCUCGAGCGCCUCCCCUCCUCCUCUUCCGGCCGGAUCCCCAUCCAUUCGGUGGCAGCAGCGUUGAAUCGGCGGGAGCGAGCUCGGCGAGGGACGGAGUGCGUGGAUCUGGCGGUGGGGGCCGAUGAGCUCGGCGAAGGACGGUGGACGCGGGUCGGGUGGUGAGGGACGACGGACGCGGGUUGGGCGGCGAGGGACAGCGGAGCUCCUUUCUCCCCGUCGGCGGCUGGUGAGCUUCCCCUUUGCGCCCGACAGUCCUCCUUCCUCCUCUGGCCGACGAGAUCGGCGGCGUGGAGCACAAGGAUGACCGUUCUCUCUCCUCCCUCUCUCAUCCUUGACGCGCCGUGGGUCCUACCUACGACCGAGGAACCCGUAGCCAAAGUUUGCUACGCGUUCCUAGGGAGGCCGCGCGGAUAGACGACGUGGAACGGAAUAUUCGUAUUUUUGUGCUGAGGCCAAAUGCCACAGAGAUGCACUGUGAAUGACCUGAGGAGGAUCGUCCGGGUCUCUAUGCUGCUGCACAAUAACCCCACAUGGCUGCAUACUCAGAUUAUUUGGCCUGACCUGGCCCUGUUUAGUUCCCAAAAACUUUUCACAAAAACAUCACAUCGAAUCUUUGGACACAUGUAUAGAGCAUUAAAUAUAGAUAAAAAGAAAAACUAAUUGCACAAUUUGUAUGUAAAUGGCGAGACGAAUCUUUUGAGCCUAAUUAGUCCAUGAUUAGCCAUAAGUGUUACAGUAACCUACAUGUGCUAAUGGCAGUUUAAUUAGGCUCAAAAAGUUCGUCUCGUAGUUUUCAGGCGAGUUAUGAAAUUAGUUUUUCCAUUCAUGUCUAAAAACCUCUUCCGACAUCCAGUUAAAUGUCUGAUGUAACACCUAAAAUUUUUUAUUUCACCAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
20.53%
ME_num:
MEP:
45.12%
HE_num:
HEP:
34.15%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.66
Avg Expression:
7.28
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 1.77292915566052 | 0.00040232285903214 |
| 2 | Azucena // root // control--/--Azucena // root // Al | -1.59736146563642 | 0.0365137342032126 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hN | 1.24377118272871 | 0.00895591826888043 |
| 4 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -1.00965628260317 | 6.83259315600768e-05 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | 1.05373462357773 | 0.0295280071808344 |
| 6 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | -1.31572964679725 | 3.95043541714848e-06 |
| 7 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | -1.62839800551979 | 9.26883006236883e-08 |