Chr:
Chr10
Start:
10928266
End:
10930233
Strand:
-
Ref_name:
LOC107279232
Sequence
(XR_001540825.2):
UUGCAGGCUACAGCCAUCCUGCGUGUUCUUAGUGCAGCACCUUUAUAUACGUUCUUUCUAGAACAAGGGCAAUUUACAGCUUUGGUCCAUUAGAGGGAAAAAGGUGAUCAAGAAGAAAUCAUUGUUCUGCUUGGGAACAAAACUGAUGUUGUUGACAAGAGGUGCGUGGUUCAGAAAUUUUCUUGUUUUCUGUAGCCUUUUCCUGUUGUCUUGCUUAUCCGAUGGAUUUUAAUCACUAAAAUUGGGAUUCAGUUAAUUGAACGUUAAACACAUAGCUCUCUUUUCCCUGUUGAAGCGCAUCUUCCAUGGGUCUGUAACAGCUCUGCCUGCUCAAGGUUGGUCGUGAGCACAACUUACAUUCACAUUUUCAGCAUGGUUUUCUCCUCUAUUACUAAUCAUUGAACUCAUUAUUUUCUUUGAUGAAAACUCUACUUGUUUUUUGCAAGUUCUCUCUGUUUUAUUAAUUUGAUAUCUGAAUUGUGUUUUAGGAGCCUAUAUAAAAUUAUAAAAUUAUGGUGUGAAAUAUGAACGUAUCAAUAAUUGUUUUUCAUGAAACUUCUAACGAACAUUUUUCUGUACCUUUUAUAUAUUUUGCCCUUAUGAUUUAUUCAUUACUCAAAGAAUAAGCAAUCUUUGUUGGUAAGUAAGUAUACUGGGUAUGCAUUGAUAUGGAAAAACUUUGAGCAAACAUUUUUUUCACUUCCUUCGAAGCGUAAUACUACAAUGUUGUGAUUCUACUCUUCAAUCUCAGUAGACGAUGACAACCCAGAGAGUUUCUACAGCCAAAAUGUGAUACAUCAAGUCCUUCAAGUUUUAAGCUGCAGCAGCUUUUGCACCACUGCACCAACCUGUUUGUAUCAUUUAGACAUCACUUGCUUGGAUGCCAUCCUCACACCGUUGUAUAUGUCAGAUUAUUUUCAUAAAACCAUUAAAUUCCAUUUAAAUUCUUUGUACUUUAAGAUUUGUGAAUAUGUUUUCUCCUAUAUUUCUGAGGCUGUGCAAACUCAUUUUUAGAGAUCAACAUGUCUUGAGUAAACUA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
33.13%
ME_num:
MEP:
19.51%
HE_num:
HEP:
47.15%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
caryopsis
Tau :
0.70
Avg Expression:
16.59
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Caidao // leaf // none (control)--/--Caidao // leaf // 0.5% Na2CO3 solution for 36h | -8.08703226774584 | 1.83287786535258e-08 |
| 2 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -1.06962469340808 | 0.000166346611755038 |
| 3 | WD20342 // leaf // none (control)--/--WD20342 // leaf // 0.5% Na2CO3 solution for 36h | -5.90817286847595 | 0.00899115040661789 |
| 4 | Nipponbare // leaf // "wild_type,control,2"--/--Nipponbare // leaf // "wild_type,drought,2" | -1.40458730099782 | 0.00278924600263355 |
| 5 | Nipponbare // leaf // control--/--Nipponbare // leaf // drought | -1.40466202603601 | 0.00287782816407959 |
| 6 | Nipponbare // leaf // "wild_type,control,1"--/--Nipponbare // leaf // "wild_type,drought,1" | -1.4047875583427 | 0.00279851893087361 |
| 7 | Nipponbare // shoot // No_DIS;_mock_inoculated--/--Nipponbare // shoot // No_DIS;Fr13_inoculated | -1.01771328336661 | 0.00636047265758275 |