Chr:
Chr10
Start:
123422
End:
126259
Strand:
-
Ref_name:
LOC107279211
Sequence
(XR_001540707.2):
UCCUUUUCUCCCCCACAAACCAAGCUCUCUCUCUCUUCUACCAUGGCAGCCACCACCGGCUAUUGCCGAUCUCCCUCACCGGAGCAUUGCCGGACAAACCCUCGCGCCACCGGGCUUGCCUUGAUGAGGUGAACCCAUUUUUCUAGUUUCCCCUCUCCCUUAGCCGUCCUAUAAGCCACUAUAGCCACUUCUUUUACCGGCCGGAGCAAGCUUUUGCCGCCGCCGUUCCGGCUUCAUAUCUCACUUCCACUGCCGACCUCUGCCGUCCCCGGAUGCGCGUCGACGGGGAACAUGUUAUGUUGCCGACGUCGCCGCGUUUCGGCCACCGGAGGGCCGGCGCCCCGCUCGUCCUCUCUUCUCCCUCUCUCGCUGCCAACGGAAGAGGAGAAGAAAGAAGACGGGAGGAAGGAGAAGAAAAAGAAAAAGAAACACUGACAGAGUCAUUUUGGAGUUCUUGCCAAAGCUGGGAGUUCAAUCACAUAAGUUAGUUUCAUUCUAACUUAAUUCUCAAGUCUAGAUUAGAUAGAUGGUUUAGGUCUAUAGCCAAACAUUAGAGUUAAGUCAUUCUAUAGCUUUUGCUGUAUUAGUUAGCCACAAGUUUUUAAAUACCCAUAUAUUUUGUAAUAAUAUAUCCUUUGGAGUCUUAUUCAAACGUAUGCAAUGAAGAUCCAGAUUGUUGAACAUGUACCAAUUUACUAAUCCA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
70.12%
ME_num:
MEP:
22.36%
HE_num:
HEP:
7.32%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
embryo
Tau :
0.84
Avg Expression:
4.25
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Caidao // leaf // none (control)--/--Caidao // leaf // 0.5% Na2CO3 solution for 36h | -9.08992841196824 | 4.01294644482143e-06 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | 2.34456853439503 | 0.000457067614121942 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 1hA | 2.36758166243071 | 0.00102227267180227 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hN | 3.1216645288356 | 8.51030017229551e-07 |
| 5 | Nipponbare // leaf // H2O_control--/--Nipponbare // leaf // Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 3.30784712111937 | 1.55895925312438e-05 |
| 6 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 1h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 1h50 min" | 7.01490555065782 | 1.70269458059795e-08 |
| 7 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS256 | 5.32988011822429 | 8.11964594191399e-09 |
| 8 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS279 | 4.72913009113831 | 2.39857583282575e-07 |
| 9 | WD20342 // leaf // none (control)--/--WD20342 // leaf // 0.5% Na2CO3 solution for 36h | -11.2628555504375 | 1.11977169719164e-15 |
| 10 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | 5.52234531157111 | 1.96153799813388e-27 |
| 11 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | 4.31206961933164 | 5.2433501489119e-08 |
| 12 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -3.942393038524 | 0.0203897321437096 |
| 13 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_L8 | 5.39497949976684 | 7.55843914043078e-07 |
| 14 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12 | 4.79130486450087 | 3.55812478161714e-08 |
| 15 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_RS105 | 3.97273584201313 | 0.000569174222186473 |
| 16 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7341 | 4.59038950183667 | 5.6597549826752e-05 |
| 17 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7331 | 4.36244047362648 | 0.00287847588361801 |
| 18 | Nipponbare // leaf // "wild_type,control,2"--/--Nipponbare // leaf // "wild_type,drought,2" | 5.10530714502417 | 0.0100853663659442 |
| 19 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7342 | 4.7990527289241 | 1.25111924040262e-06 |
| 20 | Nipponbare // leaf // control--/--Nipponbare // leaf // drought | 5.10522757107771 | 0.0101752449302775 |
| 21 | Nipponbare // leaf // "wild_type,control,1"--/--Nipponbare // leaf // "wild_type,drought,1" | 5.10513397203005 | 0.010111208235208 |
| 22 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | 5.94688268334329 | 0.000132052187689555 |
| 23 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | 3.04599726848189 | 0.0209843003660775 |
| 24 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | 6.85785405977933 | 7.92794697702916e-07 |
| 25 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -3.10092903608054 | 0.0221087626513008 |