Chr:
Chr10
Start:
10780126
End:
10795284
Strand:
-
Ref_name:
LOC107279188
Sequence
(XR_001540528.2):
ACUCCAAAAACCCGUCCUCAGUUCGGAUUGCAGGCUGCAACUCGCCUGCAUGAAGCAGGAAUCGCUAGUAAUCGCCGGUCAGCCAUACGGCGGUGAAUCCGUUCCCGGGCCUUGUACACACCGCCCGUCACACUAUAGGAGCUGGCCAUGUUUGAAGUCAUUACCCUUAACCGUAAGGAGGGGAAUGCCUAAGGCUAGGCUUGCGACUGGAGUGAAGAGAUCGGGAGAGCGGA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
5.89%
ME_num:
MEP:
21.95%
HE_num:
HEP:
71.95%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.87
Avg Expression:
1153.16
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 9h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 9h50 min" | 2.54186164337984 | 0.000595999708438025 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 7.4967864235355 | 0.0362259812384685 |
| 3 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | -1.15799046755102 | 0.00917429923434675 |