Chr:
Chr10
Start:
5962492
End:
5963502
Strand:
-
Ref_name:
LOC107279169
Sequence
(XR_001540511.2):
AGGAGAAGGGGAGAAGGAAUAGGGGAGAGGAGGGAGGAGUAUACGGGGAGGGGGGCCGGAUCCGAUCGCCCAGGGCGAUCGAUCGCCCAUUAGGGCCCCCCGAUUCGCCUCCUCUCCGCCUCGGCAGACGGCGCCGGCGCCUCUUCGUCGAGAACGAGGUGGCGAUGGCAGCACACAACGCUGCCCAUGGGCCACCUAGGCGAAGGCGUACCCCGGCCCUGGCGGUGUCUCCUUCUCAGUGAAUCCAUCGGCAAGCUCCAACUCUAAUACGGUAUCGAUCCAUCAGCAGGGCACUGCUACCGUGAUUACCAGAUCUUGCUUCUGGUGCCAUCGUCCAUCGAUAUCGCGGCACUUCCCGAGCGUCGAUCAAUCAACCAGCCUGCAUAUGCCAUAUGGUCUGUGGCGACGGCGGCGGCCCACCAUCAUCAAGCCGUGCAGAGACAGCACUGAUCUAUAUAUCAGGCAGCAUCCUUGAUAGUCUCCUGUCAGGCGUGCUGUUCGCAUGCCCGGUCAUCCAUGCCUUUGGUGCUAGUCUGAAGAAUCAAUAUCUGGGGAUAUAGAGAUUCUUUAUUCGUUUCUAUGAACCACAUCCAGGAUCUACCUGAGCAAAUUAAUCCAGGGUCCGCAUUAGGCUGAUUUAAUCGCCAUACGUACUACCUCCGCUUCAUUGUUAUGUUUCUGUCUUGAUCUCCUGGUUUUGAUAGGGAAAAGAAGCACUUAUACUGUCCAUUCAAAAUUCAGUAUCCUGCUAGAGCAUUAAGUUUAAUUUGCACGAUUCUGAAUGUUAGAGUGAUUUUGUUUGUAAAUCUUAAUCAGAGAUUGAUACUUCUUGCUCAUGGUCAAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
83.33%
ME_num:
MEP:
11.18%
HE_num:
HEP:
5.28%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
anther
Tau :
0.99
Avg Expression:
198.89
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
Num. | Condition | log2(FoldChange) | Padj |
---|---|---|---|
1 | BR-IRGA_409 // spikelet // control condition (29C) for 7 hrs--/--BR-IRGA_409 // spikelet // high temperature treatment (38C) for 7 hrs | 1.66077684930245 | 9.74034644065171e-07 |
2 | Baldo // root // control--/--Baldo // root // 100 mM NaCl | 1.66119994441747 | 0.0161149448655909 |
3 | Vialone_Nano // root // control--/--Vialone_Nano // root // 100 mM NaCl | 1.97493317480584 | 0.004670271227507 |