Chr:
Chr10
Start:
991562
End:
998428
Strand:
-
Ref_name:
LOC107279161
Sequence
(XR_001540504.2):
UCCCCCACUGCUGCCUCUGCCUCCCCUCACGCUGUCCCCGUCACCAGCGCCGCCGCCUCCACCUCCCCCUCGCGCCGCCGUCGCGUCACCGCCGAGUGCCCCCUCUGCCUCCCAAUCAUGCUACCACCUCCGCCUCCCGCCAUCCCCAUCGCCGAACGCCUCUGCCUCGCUCCGCCGCUUCCGCCGUCGCCGAGCACUGCCGCAGCACCGUCCUCCACUGCCGCUGCCAUCGCCGAGCGCUGCCACUGCGUCCUUCGGCGCCAUCGCUGACGGCUGCUGCUCCGCCCUCCGUUGCCGCUGCCAUCGAAGAAACGGCAGUGGUGACAGAACCGACAUCAAGGAAGGCGGUGGCUGCAGCGAGAAGAGGAGAGCCGCUCCAAACCUAGAUGGCGGUACAAAUCCAGUGGAGCUUUUGGCCGCUUGCUGCGCGUCACCUCUUAGGGAAGAAGAACAUGAGGUGAGAGUGAGGGCGUUCCAAAUGGAGGAGUGCGGUGUCCCCUAGUGAUAGCCUGUACCCACGGAUCCGCCAUCCCCACACGUCGACUCAUCCACGUGAUUGCUGUGUUGUGGCUCUAUUGGCAAUGGUUAGAAGACAGUGCUGGCUGUGACAACAAAAGGUGAAACUAAAGAGAUUGAAAAGAUAAAACGGUGUUUUUUUUCGAAGGAGACCAUCAUGGAGGAAAGAAGAGAGGGUGGAGUUGCAAACAUGAACCAUAUAUAUACCUUUUGUCAUGCUUGAUUAAUUUGCUCCCAGAUGAAAGUAACUCAUUGCUGCACAACUCCUUGAAUUGAGGGUUCCGAUUCUAGAACACAACAUCCUCUGCAGAUUUUUUACUGGAAGGUGUUCCUUUUGUGCUUCUUAAACUGAAGGAGCUAUCCAAGGAAAAAGAAUAAAUAAGAUCCUAUCGUCUUCAACGUGAUGCUAUCAUCCUUGGUCAUCAGGAAAAACUCAGAAGACCAUGGACCGCUCCUGCCACUCAUAGCAAUCUUGAUCAAUUAAUUGCUUCAGUUUAGAGAGUUUUUUUCCUACAGGCAGGUGAGAUGACCACCAGGCACCAGCACAAUAGCUCAUUACAAGAGCACAAACCAGACUGAAGAUUGUUUGGCAGCUGAAACUGCACUGUGUAGGCAGUAGCCCUUCUUGAGAAGUGAUGGCCAUGACUUUUGAGCCUUUGAUCAUCUGGAACAGCAACACUUGGGACCUGUACAAAUUUGCUGAUGGUUCCUUCUACAAAAAUUGAAUGUGCAAUAUCUGAAUGUUGCCUACUUCUGAAUUGUCGAAACAAGAAUUUGGCAAUAAUAACAAGAAUUCGGCAAUAAUAAAAGGGGAUAGCGCACGAGA
Sequence
(XR_003238893.1):
UCCCCCACUGCUGCCUCUGCCUCCCCUCACGCUGUCCCCGUCACCAGCGCCGCCGCCUCCACCUCCCCCUCGCGCCGCCGUCGCGUCACCGCCGAGUGCCCCCUCUGCCUCCCAAUCAUGCUACCACCUCCGCCUCCCGCCAUCCCCAUCGCCGAACGCCUCUGCCUCGCUCCGCCGCUUCCGCCGUCGCCGAGCACUGCCGCAGCACCGUCCUCCACUGCCGCUGCCAUCGCCGAGCGCUGCCACUGCGUCCUUCGGCGCCAUCGCUGACGGCUGCUGCUCCGCCCUCCGUUGCCGCUGCCAUCGAAGAAACGGCAGUGGUGACAGAACCGACAUCAAGGAAGGCGGUGGCUGCAGCGAGAAGAGGAGAGCCGCUCCAAACCUAGAUGGCGGUACAAAUCCAGUGGAGCUUUUGGCCGCUUGCUGCGCGUCACCUCUUAGGUCGGUCCCUCUUUCCCUCAGGUUGUUGUCUUCGUUUAUACCCAUCUAUUUUUUGCUGUCCAUCGCCUCUGCAGGGAAGAAGAACAUGAGGUGAGAGUGAGGGCGUUCCAAAUGGAGGAGUGCGGUGUCCCCUAGUGAUAGCCUGUACCCACGGAUCCGCCAUCCCCACACGUCGACUCAUCCACGUGAUUGCUGUGUUGUGGCUCUAUUGGCAAUGGUUAGAAGACAGUGCUGGCUGUGACAACAAAAGGUGAAACUAAAGAGAUUGAAAAGAUAAAACGGUGUUUUUUUUCGAAGGAGACCAUCAUGGAGGAAAGAAGAGAGGGUGGAGUUGCAAACAUGAACCAUAUAUAUACCUUUUGUCAUGCUUGAUUAAUUUGCUCCCAGAUGAAAGUAACUCAUUGCUGCACAACUCCUUGAAUUGAGGGUUCCGAUUCUAGAACACAACAUCCUCUGCAGAUUUUUUACUGGAAGGUGUUCCUUUUGUGCUUCUUAAACUGAAGGAGCUAUCCAAGGAAAAAGAAUAAAUAAGAUCCUAUCGUCUUCAACGUGAUGCUAUCAUCCUUGGUCAUCAGGAAAAACUCAGAAGACCAUGGACCGCUCCUGCCACUCAUAGCAAUCUUGAUCAAUUAAUUGCUUCAGUUUAGAGAGUUUUUUUCCUACAGGCAGGUGAGAUGACCACCAGGCACCAGCACAAUAGCUCAUUACAAGAGCACAAACCAGACUGAAGAUUGUUUGGCAGCUGAAACUGCACUGUGUAGGCAGUAGCCCUUCUUGAGAAGUGAUGGCCAUGACUUUUGAGCCUUUGAUCAUCUGGAACAGCAACACUUGGGACCUGUACAAAUUUGCUGAUGGUUCCUUCUACAAAAAUUGAAUGUGCAAUAUCUGAAUGUUGCCUACUUCUGAAUUGUCGAAACAAGAAUUUGGCAAUAAUAACAAGAAUUCGGCAAUAAUAAAAGGGGAUAGCGCACGAG
Sequence
(XR_003238894.1):
UCCCCCACUGCUGCCUCUGCCUCCCCUCACGCUGUCCCCGUCACCAGCGCCGCCGCCUCCACCUCCCCCUCGCGCCGCCGUCGCGUCACCGCCGAGUGCCCCCUCUGCCUCCCAAUCAUGCUACCACCUCCGCCUCCCGCCAUCCCCAUCGCCGAACGCCUCUGCCUCGCUCCGCCGCUUCCGCCGUCGCCGAGCACUGCCGCAGCACCGUCCUCCACUGCCGCUGCCAUCGCCGAGCGCUGCCACUGCGUCCUUCGGCGCCAUCGCUGACGGCUGCUGCUCCGCCCUCCGUUGCCGCUGCCAUCGAAGAAACGGCAGUGGUGACAGAACCGACAUCAAGGAAGGCGGUGGCUGCAGCGAGAAGAGGAGAGCCGCUCCAAACCUAGAUGGCGGUACAAAUCCAGUGGAGCUUUUGGCCGCUUGCUGCGCGUCACCUCUUAGGUCGGUCCCUCUUUCCCUCAGGUUGUUGUCUUCGUUUAUACCCAUCUAUUUUUUGCUGUCCAUCGCCUCUGCAGGGAAGAAGAACAUGAGGUGAGAGUGAGGGCGUUCCAAAUGGAGGAGUGCGGUGUCCCCUAGUGAUAGCCUGUACCCACGGAUCCGCCAUCCCCACACGUCGACUCAUCCACGUGAUUGCUGUGUUGUGGCUCUAUUGGCAAUGGUUAGAAGACAGUGCUGGCUGUGACAACAAAAGGUGAAACUAAAGAGAUUGAAAAGAUAAAACGGUGUUUUUUUUCGAAGGAGACCAUCAUGGAGGAAAGAAGAGAGGGUGGAGUUGCAAACAUGAACCAUAUAUAUACCUUUUGUCAUGCUUGAUUAAUUUGCUCCCAGAUGAAAGUAACUCAUUGCUGCACAACUCCUUGAAUUGAGGGUUCCGAUUCUAGAACACAACAUCCUCUGCAGAUUUUUUACUGGAAGGUGUUCCUUUUGUGCUUCUUAAACUGAAGGAGCUAUCCAAGGAAAAAGAAUAAAUAAGAUCCUAUCGUCUUCAACGUGAUGCUAUCAUCCUUGGUCAUCAGGAAAAACUCAGAAGACCAUGGACCGCUCCUGCCACUCAUAUGCAGGUCAGGGGUCUUCUUUGUGAAAAGAGUUUAUUCAAACAGCCUAAUUGGGUUACAGUUCUUCGAUGGAAUUCAUGAAGGCACAUAUGAAUGGGGUACAAAAUUUAUCUAAAUGCUCCAAAACAUUGUAGGAUCGAACACAAGUAACCAAGCCUCCAAAACUUUUUUCAAAACGUUUUUUGUCAAAAUCAACGCAUCAAGAACACGAUCAUGCAAAGCAAAUCCAAGAGCAAAAGAAGACUCCAACUUUUUAGAUUUUUCAAUCUCAGAUUCCAAUUUCUUGCAAUUAACAGAAUAGACAUCUUG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
57.72%
ME_num:
MEP:
26.83%
HE_num:
HEP:
15.24%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
panicle
Tau :
0.78
Avg Expression:
7.68
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -1.09976526301884 | 0.0355368139953912 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -1.73811721999062 | 6.47106527324018e-05 |
| 3 | Nipponbare // root // "mock,14_days"--/--Nipponbare // root // "auxin(50CM_2,4_D),14_days" | 3.10953741404368 | 0.0150386885077874 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -1.95167288545827 | 1.50323287036559e-07 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -1.16440931581484 | 0.000114414711595175 |