Chr:
Chr10
Start:
10648514
End:
10650479
Strand:
-
Ref_name:
LOC107279160
Sequence
(XR_001540503.2):
CCCCUUCUCUCGGUCACUAUCUCCGCAUCUCCGCUCCCUCGCAACCACCUCCAACGCCAUCGCAUCACUUCUCUCUCCAGCGACGCUCCGACGCGCUGCCGCAUCCCCGUCUGGUUCCGCCACGAGGAGGGGUCGAGGCCUGAGCCCGACAGUGUGCCGGUGAGGCAUGAGCCCGACAGUGUGUCGGAGUUGCGGCGGUGGAUGAGGCGAGGGCGGGGUAGGGCAUAGCCGCCGUGCAUAGGCUGCCGCGCCGCAGUGGAACAGAGAGGAGGCGCCGCAUGGUCAGGGUCGGACGCUCAUCCCGCGGUGGCUGCCGAUCCCGCUGCCAGGUCAUCGUCGUCGCGCGAUCCUGGCUGCUCCUCUGUCGCAACCCUACCGGCUCCUUCCCUGCGCCGCCGCGACCGCCUCGGUGGUGCCACGCGAGUCCAUCCCGCCGACAGGUCGUCGUCACGCGAUCCCGCUGGCUCCUCCGUCGCCACCUCCACGAGUCGCCAUUACUGAUGGCGAUUUCUUCUCUAUUCUCAAGUCUUCCCCAUAUCUAAUCCCUCUUUCCUCCUCUUUGUGCUUUCUGCGUGCUCUGCCUCUCUGCUCAGUGCUAUUGAUUUCUUCACAAGGCUAUGUAAGAAAAGCUUUGCAGGCUAAAGGUAUGCAGAGAUGGAGUAUUGUGCAUCUUUGGGCACGGCCACAGCAGUCGUCCUUGCUGCUAUAAUUGGUUUAAUGGUAUCUUGGACCAAAUCAUCUCUGGGUUAACAUGAUAUUUCUAACGUACAAGUGUCCGCUGUCUCUUAGAUAGCCAAAACACUAAUCAUUAUGCAGACUGAAUUGAGGUUAAUAGCAACAAAUCCUAUAACAAACAAGUGUUGUGUCCAUGGCUUGAGGUUGAUAGCAAUAAUUUUUUAAUUGACGCAGAAUGUUAGAAUGGAAAUGUUAAGUUUGCUUUAGUCAUUGUUAAAUGUAGGUAAUUUUUUUUGGAAUGGUCAACAUAACGAUAAUUCCAUUUAGAGACAUAUUUUGCUAAAAUAAGAAAUAACUCGUCCAACACCCCUAAAUCUUUGACGUGUUUGCUGAUCAUAAUAUUGCCCUUGCUUUUUAGGCAUCUUGUGUGUUGGUAACAUUCAAGUGGCUGAAUUGGAUUGUAAAUAAAACCUUCAUUCUUACCUAUAGAUUUCCCUUCUAUAGAAAAUACUUUUCUCUGAAGUAUCUAAUAUAAUGCUCUGCCGCAUGGGUGGUAGUUAUUCCAAUGGUACAAUGCAUGCUGACGACGGCGAGGCGGUCGAUCCAGUACCGCAGCACCUCGAGCUCGCCGGACCUAGAGGUUGAGGUGUCGAGCGUGGCCGUACGGCAUUAAUAUAUAGUUUUGUUUGUGGUUUUGAAUUAUCAACAUUGAUAACUGAUAUUAUUAUGCAAACUAGAAACUUGAGAAAAAUAUGCACAUGCUGCACUACUAUUGUUGUUCUAAAAGAAAUAUUCCUUUGAAAGAAAAAAAUAUUGCAAAACAUGCAUAUUACCCGCACAAGUAGGCUGAAACUCUGUUGAAUCUUCCUCUGCUUUAUCUGCAAUGCUAAAACAGCGAGAAUAUCCUUAUCGACACAUUUUUUCAAUGUACAUGAGUUAUCAAGUUUUACUGAUGCAGUGAUUCAUUAUCAGAAAUAAAGAGUGAUUAGUACUUAUGCUUGAAAUUUCCUCCAUCUUUGUUAUGUAAAAGAAAUGGAGUGACAAACGGGAAAACAAAAGAGAAAGCUCCUCAUGUGUUUAUGUAUUUCCAUCCUGCAUAUGAACUGUU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
92.68%
ME_num:
MEP:
6.91%
HE_num:
HEP:
0.2%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
anther
Tau :
0.90
Avg Expression:
2.04
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | -2.52108510764671 | 0.0259769058501641 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | -3.36371820537507 | 0.00631353988916938 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -4.1040439916746 | 0.00377615876583296 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -3.07927200904523 | 0.0449369657007796 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -4.25201389054827 | 0.00834827908208829 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -5.38238977973639 | 0.000951110759813195 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -2.22455565415168 | 0.0217909806722086 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -4.04884403950313 | 0.00321590378052072 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -5.28492532437493 | 0.000440312059891515 |
| 10 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -4.70623019778559 | 0.00283081376860196 |
| 11 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -3.55408280983351 | 0.00107243578691164 |