OSA-LNC107279157


Function Link


Basic Info

Chr:

Chr1

Start:

25579001

End:

25583719

Strand:

-

Ref_name:

LOC107279157

Sequence
(XR_001540664.2):

CCAAGGUGCAAGCAAGCAAUUGGAGGGACUGUUGGAGUGUAGAGCUCCCCAAAAGCUUGCCAGCAGAAAGGGUUGUUUAGGCGGUAGUGGGAUAUUUGGACAGGCCUGAGUUGUACUCCAGUAAGAGUUAUCCCUGAACAAGUAAAACUGGUCUAUGAUGAUUGGUGUUUGGACUUCUGAGACUUGGAUGUUCGAGAACCGUACAUCUUGAACCAAGCCUAAGCCACCCUGCAAGUAGAGUUUAAUUUGUUUAGCUCAGUGUAUUCCAUCAGUGUUGAGGCUGUUUUCUGGGGAGGAUAUUGUUACGUCAUGGACCAUCACUCCUUGACAGCUGUCAAACUUGAGAUGACACUGCGAGCUGUUGACAAUAGUGAUACCAGCUACUACAACGUUGAAACUACCAUAGAAUCUCAGUGCCUGCAUCAGAGUUUAACUUGUGGCAUCCUUUCAAACUCCACAUCGUACUGCUGGAAGUAUCCAAGCGUUGGCGAUGCCGUCGUGCGAGAGCGGCGGCCGGCGAAGCGGAGUGGAGCGGUGGCGGCAAGCGGGCGAGAGCGCGGCGGCGGCAAGCGGGCGAGCGCGCGGCACUCCGGCGAAGCCUCGAGUCACGCUCCCGGCCUCUGACGGCGUUGUCGCCGCACGAGCCACGUUCUCGACGCACAGUGCGAAUCCUGCCGAGCCACUUGACUAGCGUCGUCGCCACAUCAGCACGGUUCAGAAGCCUUAGCACGCGAAGCUGAGGAGUCUCCAUCCGCGAGAUCGACGCCAUCUUCCUCCUCUCCGGCCGCCAGUCCUCGCCGUUGAUUUCUCUUUCCUUGCGCAUCGAUCGGAGUGGGCCGCCGCCGUGAAGCCGCCGCCAUCCGCCGUCGCCAAGCUGAUCCUGAGGUCGCCGUCGUCGUCCAAGCUUCACCAAGUCACGAGCUAUCUCGACUCUCGAGUAAGCACCUAAGAACGCCGACCCUCUUUCCCACCGUGUUGGUGACGCCGUUGCCGCCGCAUCGGCCCUCCUCUCCGCAUCGGUGAUGAUGGCUGCAGCCGCGCGCCGCCAUUGCCGACCGCACGAGGGGGAUUGGGAGGCCAGCGAGCUCGCGCUACCCUAAGCCCGCGCGCCGCCACCCAGGAGCCGCCGUCGCCGGCCGCACCACCCUCUGGCCGCGCGCGCCGCCGCCUGUGCGAGAGCAGAGAGCGAAAGGAAGGAGAGAAAUAGAGAAAGAGAGAGGGUGCUGACAUAGUCUCCAUGACAUGUGGGGCCCACGUGGGUCCCAUGCUGAGUCAGCCGCCACGUGGGAUAAAACCGUGGUCAAAACCGCCGAGGAAGCUAUUGUGAUCGGUCUUAUAAGUUGGGGGACGCCAGAUAUCCUGUUUUAUGGUUGGGGACGAUUUUGUAUCUGGCUAACAAAUUUGAGGGACAUUGCGUGUACUUUUUCCUAGCGGAUUAUUCUCAUCAAGCCCAGGGCCCCAGGCUGCCCAGCAAUAAGCCGCAUCAUAUUUUA

Sequence
(XR_003243677.1):

CCAAGGUGCAAGCAAGCAAUUGGAGGGACUGUUGGAGUGUAGAGCUCCCCAAAAGCUUGCCAGCAGAAAGGGUUGUUUAGGCGGUAGUGGGAUAUUUGGACAGGCCUGAGUUGUACUCCAGUAAGAGUUAUCCCUGAACAAGUAAAACUGGUCUAUGAUGAUUGGUGUUUGGACUUCUGAGACUUGGAUGUUCGAGAACCGUACAUCUUGAACCAAGCCUAAGCCACCCUGCAAGUAGAGUUUAAUUUGUUUAGCUCAGUGUAUUCCAUCAGUGUUGAGGCUGUUUUCUGGGGAGGAUAUUGUUACGUCAUGGACCAUCACUCCUUGACAGCUGUCAAACUUGAGAUGACACUGCGAGCUGUUGACAAUAGUGAUACCAGCUACUACAACGUUGAAACUACCAUAGAAUCUCAGUGCCUGCAUCAGAGUUUAACUUGUGGCAUCCUUUCAAACUCCACAUCGUACUGCUGGAAGUAUCCAAGGUAAGUGACUAAAUGAACCAUCUUUUGAAUUGUUUGUAUAUAAUGAUAUGCUAGAUGGAUGGUGAGAUCUUACUGUGUCAUCAUUUUCGUCGUCAUCUGUGUCUGAAUAGGUCCACCAUUGUUGUCCUCUACCAUUUAUGAUGCCAUUGCCUUGAAUUGAUACUCCAUUUAGUUUUGUAAACUCAAUCCAUUGAAGCAAACCAGAAUCCCAAGCUUUAGCACUGGUUGGGGCUACAAUUGUUCCAUCCAGCUACAAAAUAAACACAUCACUUAACAUCAUCAUGUUUUGUGUUCCACUAAUUAACUGUGUCAAGUUUGUGGAUUUUUGAACUUGUCCAGUGAUAAAAUUAGUUGGAAAUUUCCUUCGUUUCUUUUAUAAACAAAAUGACAAAUGCUCAUCAAAACAAGAUUCUCAGGCUUAUCUGCAAAGUAUAAGUAGUGGAGUUUUUUAUUCCUA

Sequence
(XR_003243680.1):

CCAAGGUGCAAGCAAGCAAUUGGAGGGACUGUUGGAGUGUAGAGCUCCCCAAAAGCUUGCCAGCAGAAAGGGUUGUUUAGGCGGUAGUGGGAUAUUUGGACAGGCCUGAGUUGUACUCCAGUAAGAGUUAUCCCUGAACAAGUAAAACUGGUCUAUGAUGAUUGGUGUUUGGACUUCUGAGACUUGGAUGUUCGAGAACCGUACAUCUUGAACCAAGCCUAAGCCACCCUGCAAGUAGAGUUUAAUUUGUUUAGCUCAGUGUAUUCCAUCAGUGUUGAGGCUGUUUUCUGGGGAGGAUAUUGUUACGUCAUGGACCAUCACUCCUUGACAGCUGUCAAACUUGAGAUGACACUGCGAGCUGUUGACAAUAGUGAUACCAGCUACUACAACGUUGAAACUACCAUAGAAUCUCAGUGCCUGCAUCAGAGUUUAACUUGUGGCAUCCUUUCAAACUCCACAUCGUACUGCUGGAAGUAUCCAAGGUCCACCAUUGUUGUCCUCUACCAUUUAUGAUGCCAUUGCCUUGAAUUGAUACUCCAUUUAGUUUUGUAAACUCAAUCCAUUGAAGCAAACCAGAAUCCCAAGCUUUAGCACUGGUUGGGGCUACAAUUGUUCCAUCCAGCUACAAAAUAAACACAUCACUUAACAUCAUCAUGUUUUGUGUUCCACUAAUUAACUGUGUCAAGUUUGUGGAUUUUUGAACUUGUCCAGUGAUAAAAUUAGUUGGAAAUUUCCUUCGUUUCUUUUAUAAACAAAAUGACAAAUGCUCAUCAAAACAAGAUUCUCAGGCUUAUCUGCAAAGUAUAAGUAGUGGAGUUUUUUAUUCCUA

Sequence
(XR_003243681.1):

CCAAGGUGCAAGCAAGCAAUUGGAGGGACUGUUGGAGUGUAGAGCUCCCCAAAAGCUUGCCAGCAGAAAGGGUUGUUUAGGCGGUAGUGGGAUAUUUGGACAGGCCUGAGUUGUACUCCAGUAAGAGUUAUCCCUGAACAAGUAAAACUGGUCUAUGAUGAUUGGUGUUUGGACUUCUGAGACUUGGAUGUUCGAGAACCGUACAUCUUGAACCAAGCCUAAGCCACCCUGCAAGUAGAGUUUAAUUUGUUUAGCUCAGUGUAUUCCAUCAGUGUUGAGGCUGUUUUCUGGGGAGGAUAUUGUUACGUCAUGGACCAUCACUCCUUGACAGCUGUCAAACUUGAGAUGACACUGCGAGCUGUUGACAAUAGUGAUACCAGCUACUACAACGUUGAAACUACCAUAGAAUCUCAGUGCCUGCAUCAGAGUUUAACUUGUGGCAUCCUUUCAAACUCCACAUCGUACUGCUGGAAGUAUCCAAGCGUUGGCGAUGCCGUCGUGCGAGAGCGGCGGCCGGCGAAGCGGAGUGGAGCGGUGGCGGCAAGCGGGCGAGAGCGCGGCGGCGGCAAGCGGGCGAGCGCGCGGCACUCCGGCGAAGCCUCGAGUCACGCUCCCGGCCUCUGACGGCGUUGUCGCCGCACGAGCCACGUUCUCGACGCACAGUGCGAAUCCUGCCGAGCCACUUGACUAGCGUCGUCGCCACAUCAGCACGGUUCAGAAGCCUUAGCACGCGAAGCUGAGGAGUCUCCAUCCGCGAGAUCGACGCCAUCUUCCUCCUCUCCGGCCGCCAGUCCUCGCCGUUGAUUUCUCUUUCCUUGCAGCGCAUCGAUCGGAGUGGGCCGCCGCCGUGAAGCCGCCGCCAUCCGCCGUCGCCAAGCUGAUCCUGAGGUCGCCGUCGUCGUCCAAGCUUCACCAAGUCACGAGCUAUCUCGACUCUCGAGUAAGCACCUAAGAACGCCGACCCUCUUUCCCACCGUGUUGGUGACGCCGUUGCCGCCGCAUCGGCCCUCCUCUCCGCAUCGGUGAUGAUGGCUGCAGCCGCGCGCCGCCAUUGCCGACCGCACGAGGGGGAUUGGGAGGCCAGCGAGCUCGCGCUACCCUAAGCCCGCGCGCCGCCACCCAGGAGCCGCCGUCGCCGGCCGCACCACCCUCUGGCCGCGCGCGCCGCCGCCUGUGCGAGAGCAGAGAGCGAAAGGAAGGAGAGAAAUAGAGAAAGAGAGAGGGUGCUGACAUAGUCUCCAUGACAUGUGGGGCCCACGUGGGUCCCAUGCUGAGUCAGCCGCCACGUGGGAUAAAACCGUGGUCAAAACCGCCGAGGAAGCUAUUGUGAUCGGUCUUAUAAGUUGGGGGACGCCAGAUAUCCUGUUUUAUGGUUGGGGACGAUUUUGUAUCUGGCUAACAAAUUUGAGGGACAUUGCGUGUACUUUUUCCUAGCGGAUUAUUCUCAUCAAGCCCAGGGCCCCAGGCUGCCCAGCAAUAAGCCGCAUCAUAUUUUA


Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

108

LEP:

21.95%

ME_num:

355

MEP:

72.15%

HE_num:

28

HEP:

5.69%

Type:

HCR (High-Capacity ncRNA)


Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

embryo

Tau :

0.71

Avg Expression:

5.16

Tip: OSA-LNC107279157 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN-1.662934303870892.62064926392613e-05
2Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN-1.536995200319170.000233230717481908
3Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA-1.723449256566860.000611758684198458
4Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA-2.107013882943422.59082459646531e-06
5Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA-1.738764328100291.53562029906405e-06
6Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA-1.535256225846683.24918128514236e-05
7Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN-1.241001774550440.00022274723120051
8Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA-1.639778710932144.98974190287537e-05
9Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA-2.120486011832197.01881097067786e-09