Chr:
Chr1
Start:
25579001
End:
25583719
Strand:
-
Ref_name:
LOC107279157
Sequence
(XR_001540664.2):
CCAAGGUGCAAGCAAGCAAUUGGAGGGACUGUUGGAGUGUAGAGCUCCCCAAAAGCUUGCCAGCAGAAAGGGUUGUUUAGGCGGUAGUGGGAUAUUUGGACAGGCCUGAGUUGUACUCCAGUAAGAGUUAUCCCUGAACAAGUAAAACUGGUCUAUGAUGAUUGGUGUUUGGACUUCUGAGACUUGGAUGUUCGAGAACCGUACAUCUUGAACCAAGCCUAAGCCACCCUGCAAGUAGAGUUUAAUUUGUUUAGCUCAGUGUAUUCCAUCAGUGUUGAGGCUGUUUUCUGGGGAGGAUAUUGUUACGUCAUGGACCAUCACUCCUUGACAGCUGUCAAACUUGAGAUGACACUGCGAGCUGUUGACAAUAGUGAUACCAGCUACUACAACGUUGAAACUACCAUAGAAUCUCAGUGCCUGCAUCAGAGUUUAACUUGUGGCAUCCUUUCAAACUCCACAUCGUACUGCUGGAAGUAUCCAAGCGUUGGCGAUGCCGUCGUGCGAGAGCGGCGGCCGGCGAAGCGGAGUGGAGCGGUGGCGGCAAGCGGGCGAGAGCGCGGCGGCGGCAAGCGGGCGAGCGCGCGGCACUCCGGCGAAGCCUCGAGUCACGCUCCCGGCCUCUGACGGCGUUGUCGCCGCACGAGCCACGUUCUCGACGCACAGUGCGAAUCCUGCCGAGCCACUUGACUAGCGUCGUCGCCACAUCAGCACGGUUCAGAAGCCUUAGCACGCGAAGCUGAGGAGUCUCCAUCCGCGAGAUCGACGCCAUCUUCCUCCUCUCCGGCCGCCAGUCCUCGCCGUUGAUUUCUCUUUCCUUGCGCAUCGAUCGGAGUGGGCCGCCGCCGUGAAGCCGCCGCCAUCCGCCGUCGCCAAGCUGAUCCUGAGGUCGCCGUCGUCGUCCAAGCUUCACCAAGUCACGAGCUAUCUCGACUCUCGAGUAAGCACCUAAGAACGCCGACCCUCUUUCCCACCGUGUUGGUGACGCCGUUGCCGCCGCAUCGGCCCUCCUCUCCGCAUCGGUGAUGAUGGCUGCAGCCGCGCGCCGCCAUUGCCGACCGCACGAGGGGGAUUGGGAGGCCAGCGAGCUCGCGCUACCCUAAGCCCGCGCGCCGCCACCCAGGAGCCGCCGUCGCCGGCCGCACCACCCUCUGGCCGCGCGCGCCGCCGCCUGUGCGAGAGCAGAGAGCGAAAGGAAGGAGAGAAAUAGAGAAAGAGAGAGGGUGCUGACAUAGUCUCCAUGACAUGUGGGGCCCACGUGGGUCCCAUGCUGAGUCAGCCGCCACGUGGGAUAAAACCGUGGUCAAAACCGCCGAGGAAGCUAUUGUGAUCGGUCUUAUAAGUUGGGGGACGCCAGAUAUCCUGUUUUAUGGUUGGGGACGAUUUUGUAUCUGGCUAACAAAUUUGAGGGACAUUGCGUGUACUUUUUCCUAGCGGAUUAUUCUCAUCAAGCCCAGGGCCCCAGGCUGCCCAGCAAUAAGCCGCAUCAUAUUUUA
Sequence
(XR_003243677.1):
CCAAGGUGCAAGCAAGCAAUUGGAGGGACUGUUGGAGUGUAGAGCUCCCCAAAAGCUUGCCAGCAGAAAGGGUUGUUUAGGCGGUAGUGGGAUAUUUGGACAGGCCUGAGUUGUACUCCAGUAAGAGUUAUCCCUGAACAAGUAAAACUGGUCUAUGAUGAUUGGUGUUUGGACUUCUGAGACUUGGAUGUUCGAGAACCGUACAUCUUGAACCAAGCCUAAGCCACCCUGCAAGUAGAGUUUAAUUUGUUUAGCUCAGUGUAUUCCAUCAGUGUUGAGGCUGUUUUCUGGGGAGGAUAUUGUUACGUCAUGGACCAUCACUCCUUGACAGCUGUCAAACUUGAGAUGACACUGCGAGCUGUUGACAAUAGUGAUACCAGCUACUACAACGUUGAAACUACCAUAGAAUCUCAGUGCCUGCAUCAGAGUUUAACUUGUGGCAUCCUUUCAAACUCCACAUCGUACUGCUGGAAGUAUCCAAGGUAAGUGACUAAAUGAACCAUCUUUUGAAUUGUUUGUAUAUAAUGAUAUGCUAGAUGGAUGGUGAGAUCUUACUGUGUCAUCAUUUUCGUCGUCAUCUGUGUCUGAAUAGGUCCACCAUUGUUGUCCUCUACCAUUUAUGAUGCCAUUGCCUUGAAUUGAUACUCCAUUUAGUUUUGUAAACUCAAUCCAUUGAAGCAAACCAGAAUCCCAAGCUUUAGCACUGGUUGGGGCUACAAUUGUUCCAUCCAGCUACAAAAUAAACACAUCACUUAACAUCAUCAUGUUUUGUGUUCCACUAAUUAACUGUGUCAAGUUUGUGGAUUUUUGAACUUGUCCAGUGAUAAAAUUAGUUGGAAAUUUCCUUCGUUUCUUUUAUAAACAAAAUGACAAAUGCUCAUCAAAACAAGAUUCUCAGGCUUAUCUGCAAAGUAUAAGUAGUGGAGUUUUUUAUUCCUA
Sequence
(XR_003243680.1):
CCAAGGUGCAAGCAAGCAAUUGGAGGGACUGUUGGAGUGUAGAGCUCCCCAAAAGCUUGCCAGCAGAAAGGGUUGUUUAGGCGGUAGUGGGAUAUUUGGACAGGCCUGAGUUGUACUCCAGUAAGAGUUAUCCCUGAACAAGUAAAACUGGUCUAUGAUGAUUGGUGUUUGGACUUCUGAGACUUGGAUGUUCGAGAACCGUACAUCUUGAACCAAGCCUAAGCCACCCUGCAAGUAGAGUUUAAUUUGUUUAGCUCAGUGUAUUCCAUCAGUGUUGAGGCUGUUUUCUGGGGAGGAUAUUGUUACGUCAUGGACCAUCACUCCUUGACAGCUGUCAAACUUGAGAUGACACUGCGAGCUGUUGACAAUAGUGAUACCAGCUACUACAACGUUGAAACUACCAUAGAAUCUCAGUGCCUGCAUCAGAGUUUAACUUGUGGCAUCCUUUCAAACUCCACAUCGUACUGCUGGAAGUAUCCAAGGUCCACCAUUGUUGUCCUCUACCAUUUAUGAUGCCAUUGCCUUGAAUUGAUACUCCAUUUAGUUUUGUAAACUCAAUCCAUUGAAGCAAACCAGAAUCCCAAGCUUUAGCACUGGUUGGGGCUACAAUUGUUCCAUCCAGCUACAAAAUAAACACAUCACUUAACAUCAUCAUGUUUUGUGUUCCACUAAUUAACUGUGUCAAGUUUGUGGAUUUUUGAACUUGUCCAGUGAUAAAAUUAGUUGGAAAUUUCCUUCGUUUCUUUUAUAAACAAAAUGACAAAUGCUCAUCAAAACAAGAUUCUCAGGCUUAUCUGCAAAGUAUAAGUAGUGGAGUUUUUUAUUCCUA
Sequence
(XR_003243681.1):
CCAAGGUGCAAGCAAGCAAUUGGAGGGACUGUUGGAGUGUAGAGCUCCCCAAAAGCUUGCCAGCAGAAAGGGUUGUUUAGGCGGUAGUGGGAUAUUUGGACAGGCCUGAGUUGUACUCCAGUAAGAGUUAUCCCUGAACAAGUAAAACUGGUCUAUGAUGAUUGGUGUUUGGACUUCUGAGACUUGGAUGUUCGAGAACCGUACAUCUUGAACCAAGCCUAAGCCACCCUGCAAGUAGAGUUUAAUUUGUUUAGCUCAGUGUAUUCCAUCAGUGUUGAGGCUGUUUUCUGGGGAGGAUAUUGUUACGUCAUGGACCAUCACUCCUUGACAGCUGUCAAACUUGAGAUGACACUGCGAGCUGUUGACAAUAGUGAUACCAGCUACUACAACGUUGAAACUACCAUAGAAUCUCAGUGCCUGCAUCAGAGUUUAACUUGUGGCAUCCUUUCAAACUCCACAUCGUACUGCUGGAAGUAUCCAAGCGUUGGCGAUGCCGUCGUGCGAGAGCGGCGGCCGGCGAAGCGGAGUGGAGCGGUGGCGGCAAGCGGGCGAGAGCGCGGCGGCGGCAAGCGGGCGAGCGCGCGGCACUCCGGCGAAGCCUCGAGUCACGCUCCCGGCCUCUGACGGCGUUGUCGCCGCACGAGCCACGUUCUCGACGCACAGUGCGAAUCCUGCCGAGCCACUUGACUAGCGUCGUCGCCACAUCAGCACGGUUCAGAAGCCUUAGCACGCGAAGCUGAGGAGUCUCCAUCCGCGAGAUCGACGCCAUCUUCCUCCUCUCCGGCCGCCAGUCCUCGCCGUUGAUUUCUCUUUCCUUGCAGCGCAUCGAUCGGAGUGGGCCGCCGCCGUGAAGCCGCCGCCAUCCGCCGUCGCCAAGCUGAUCCUGAGGUCGCCGUCGUCGUCCAAGCUUCACCAAGUCACGAGCUAUCUCGACUCUCGAGUAAGCACCUAAGAACGCCGACCCUCUUUCCCACCGUGUUGGUGACGCCGUUGCCGCCGCAUCGGCCCUCCUCUCCGCAUCGGUGAUGAUGGCUGCAGCCGCGCGCCGCCAUUGCCGACCGCACGAGGGGGAUUGGGAGGCCAGCGAGCUCGCGCUACCCUAAGCCCGCGCGCCGCCACCCAGGAGCCGCCGUCGCCGGCCGCACCACCCUCUGGCCGCGCGCGCCGCCGCCUGUGCGAGAGCAGAGAGCGAAAGGAAGGAGAGAAAUAGAGAAAGAGAGAGGGUGCUGACAUAGUCUCCAUGACAUGUGGGGCCCACGUGGGUCCCAUGCUGAGUCAGCCGCCACGUGGGAUAAAACCGUGGUCAAAACCGCCGAGGAAGCUAUUGUGAUCGGUCUUAUAAGUUGGGGGACGCCAGAUAUCCUGUUUUAUGGUUGGGGACGAUUUUGUAUCUGGCUAACAAAUUUGAGGGACAUUGCGUGUACUUUUUCCUAGCGGAUUAUUCUCAUCAAGCCCAGGGCCCCAGGCUGCCCAGCAAUAAGCCGCAUCAUAUUUUA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
21.95%
ME_num:
MEP:
72.15%
HE_num:
HEP:
5.69%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
embryo
Tau :
0.71
Avg Expression:
5.16
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
Num. | Condition | log2(FoldChange) | Padj |
---|---|---|---|
1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | -1.66293430387089 | 2.62064926392613e-05 |
2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | -1.53699520031917 | 0.000233230717481908 |
3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -1.72344925656686 | 0.000611758684198458 |
4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -2.10701388294342 | 2.59082459646531e-06 |
5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -1.73876432810029 | 1.53562029906405e-06 |
6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -1.53525622584668 | 3.24918128514236e-05 |
7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -1.24100177455044 | 0.00022274723120051 |
8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -1.63977871093214 | 4.98974190287537e-05 |
9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -2.12048601183219 | 7.01881097067786e-09 |