Chr:
Chr10
Start:
22603390
End:
22605399
Strand:
+
Ref_name:
LOC107279129
Sequence
(XR_001540478.2):
CGGGGUGGGGCUCGUGUGCUUCCCCCCUCCACGGGUAGAGCGUGCUAGGGCUGUUGGUGCACGGGGAGGGUUUGGCAAUAUUGUUGGCGCCUAGUACCUCCUGCCACGUCAGUGCCGGGCCGCCGUGUGGUGCCAUGGUGACGGCGCAAGAGACCGUCCAGUUGGACCUCGACGCCAGCAAUUCUAGCGCCAAAAAGGAUCAUUCCUUAAAUAAGUUUUUUCUAAGAAUCUAUUUAUAAAAUAAGUUUGUGAAAAUGACCAAAUUGUAAAAAAUCAAGGAGAGUACAUGACAACCUCGUAUACACAUACUGGAUCUUGUGUUUGUAGACGACUAUAAAUUUGUAUCCCUCUCGUCUUCUGUCUUCUCCACCCAAGUACAAAUUUGAAGUGGCAAUUUUUAAUUUUCACUCACAACACUUGUUAUACUUGCUCUAACACAUAAGUAUCUGAUAUACACCCAAAAGGUAUAUGCGAGCUACAAGAGUGGAUUAUUGGGUGAAAUCAGUCAAGCCCUCCAGGAUGGACUAAUGGAAUUAGAAACAAUAUAAUUAAUUUUGGUGCCACCACGAGUCAUGCUGCAGAUGGUAAGGUUAGUUGUUCCUGAUUCUCUUUAAUUAAUAUAACUAGUAUUAUGGCUAAUUACGUACACGUGCAUGUCGUGGAAUCAAAUCAACGACAACUUUUGCUGGCUAGUGCCAAACCGGUCACAGGAAGAAAGGAGGACAUGGCAUUGACCCAUGGUAAACGAUAUGGCAAUCGAACUGCACGCACUACUCACUGCUACUUGCUCCGUACAAAAAAAAAUCAAAAACUGGAUAUGACAUAUCUAUCAUAGUACAACGAAUCUGAAAAGAGGACUGUCCAGAUUCAUUAUAUUAGAAUGUGUCUCUAGUAUUAGGUUGGUUUUUUAUGGGACGGAGGGAGUACGUAACAUGCCUGCUGCUAGCUAGCUAGCUGUGGGUCUAUAAAUCGUGAAAACUCAACAGCUAUGUAGAGAAGCAACAAAUUAACCAAAGAGGGUGCAAUUUCAGUCAGAGUAGGGAGAAGAAAAGAGUUAGUUUAGAAAUGAGGAAGCAACACACUUCUUCUGCUGUUGCUGCUGUUGCUGCGUCUCUUUGCAAGGUGCUCCUGAUGAUCCUCGCCCUCCUCUGCACCCUGCACACUGCCUCCGUGGUCGAAGGGAGAUCAGGUCCUCCGAACGGGCCGCCAGCUCCUAGUGCCAACGAAGAGCGGCACAAUACACCGGCCUUUCACAACUAGCUAGCUUGAUAUAACAGCUGCAGACUCACCAUGCAUGACAACCUACAUACCUGCAGCUCUCUAUACCCAUGACAUGGCAUGUAAUAAUAUGUGUGUGUGAUACUACGUAUGUACUGUUUCUGUUGCCGGAUCGGAUGAUGAUCGAUGUUCAACUUACUCUCCUAGCUGAGUAGUCCCUUAAUCCUUUUCAUCUCUUUGUGUAACUAGUGAGCAAAGGAAAAUUAAAUAUAGGGAUCUCAUCGAUCUGGGGCUUCUCCAUGUCUGUCAAGAGCUUGUGUAGAUCGAGCUGUGUGAUGGUGUUAAUCCUGGGAGGCACACUAUACAUACGAAGAGUUUUAACAGA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
82.52%
ME_num:
MEP:
16.26%
HE_num:
HEP:
1.02%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
root
Tau :
0.91
Avg Expression:
1.34
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Azucena // root // control--/--Azucena // root // Al | -1.68931177547127 | 0.0153823731110704 |
| 2 | AzuNIL // root // control--/--AzuNIL // root // Al | -1.7856693655532 | 0.0112752866340061 |
| 3 | Nipponbare // shoot // No_DIS;Fr13_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -3.2037992144781 | 0.00179422734132749 |
| 4 | Nipponbare // root // "mock,1_day"--/--Nipponbare // root // "auxin(50CM_2,4_D),1_day" | 2.47865433760988 | 0.000238203439843066 |
| 5 | Nipponbare // root // "mock,7_days"--/--Nipponbare // root // "auxin(50CM_2,4_D),7_days" | 2.77342911844494 | 0.000208836364774184 |
| 6 | 9311 // leaf // control--/--9311 // leaf // salt | 1.30636218214178 | 0.0302863200806526 |
| 7 | Vialone_Nano // root // control--/--Vialone_Nano // root // 100 mM NaCl | 4.37060395041339 | 0.0216533016664815 |
| 8 | Nipponbare // shoot // No_DIS;_mock_inoculated--/--Nipponbare // shoot // No_DIS;Fr13_inoculated | 4.80914245579324 | 0.00360049448119329 |
| 9 | 9L136 // leaf // control--/--9L136 // leaf // salt | 1.75915469189486 | 6.04250350609556e-05 |