Chr:
Chr10
Start:
87557
End:
88717
Strand:
-
Ref_name:
LOC107279128
Sequence
(XR_001540474.2):
AAAAAAUAGUGAGACCCACCUCCUACACCUCACCCUCUUCCCCUCUCUUCCAAUCCUCUGCCUCCAUCCUCCAUCCUCCCGGCGACAAGCACGGCGGUACCUAGCUGUCGUCCGCGCUGAGAUCGUGCAUGAGCUCUCCUCCUCCGCUUCGUCCUCUCCCCCGUUACUCCAAUCCUAGAGAGCAACAGCAAGGACCUCUCCAUCCAUCGGUGGCUUUUUACCCAUAGGAGGGGAGAGGGGAGGCCUGGCCAUUGACGCUGUCGCGAUGGAGCGCAUGGCCAAGCACUGCUGGGAUCUGUGGGACGCAGGCAGCGACGCCGGCGUUAGAUCCAGCUGGCCGGUAGCUCAUGCCAGUGGCGGAGGGGUCAAGCCGUCGUGGGAGGAACAGGUGUUCUCGCAGGACGCAGCGGAGCACCUCGGCGGCUGCUUGUGGCCGCCGUGCUCCUACAUGUGCAGCUUCUGCCGGUGGGAGUUCCGGUUAGCAGGCGCUUGGUAGGCACAUGAACGUGCAUUGCUAUGACCGUGCUCCCCUCCGGCAGUGCGACGACGACAUCGACCCGAUUCAACCACCAAUCGGCAGCAUCUGCGAGCCGCCUACUCUUUUACCGUCAACGGUAGUAGCAGCAGCAGAGUAUCCUUUUUAGAUAAUGGAAGUUUUUAUUUAACUCAGUCAAUUACAUCGAGAUGAUACAAUUAUCCUAAGAACACUCUCGGCCUAUGCAUAUCUCCUGCUACAAAUAUCCAGCCCUAAAUCCACAACUGCUCAUCAUCAUCAUCAUAAUCAGCAGCUGCAGGGCACUAAUUCUUCGUCUCUGAAUUCCUGCAUAACAACCAUCAUCAAGAAGAGCAGGAACAAGACAAGAUGAAGAGAGGGGAGAUUGGAAGAGCUGAGGAAGAUGAGGAGGGGAGUAAGAAUGACAUGUGGCCCCACCAUUUUAAAUUACUAUCUUUUUGUAACUAACGUGUGGGUCCAUGACUAUUAUUUUUCAAAUCGAAUUGUCAUGUAAGCGCCACGUCAAUGCCACAUGGGACGAAGAUCUAGUCAAAUUAGUCA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
42.48%
ME_num:
MEP:
54.27%
HE_num:
HEP:
3.05%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
caryopsis
Tau :
0.75
Avg Expression:
3.49
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 3.90505994401228 | 0.000313054807742677 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | 3.78517060870085 | 0.000379383065794195 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 5.25410234967498 | 2.9900421422188e-08 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 4.17292365271403 | 0.000278625474854388 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 5.39084932088949 | 1.46056077677645e-08 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | 3.26023679349111 | 0.00751723613075573 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | 3.87996781780542 | 0.000210399676613082 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 3.60139144529207 | 0.00083237928756272 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 4.30051849313228 | 9.35976756305795e-06 |
| 10 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7341 | 2.01735319089808 | 2.35978431188454e-06 |
| 11 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7331 | 2.87106546964011 | 3.41372158169081e-10 |
| 12 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7342 | 2.42707624720136 | 3.81451348950702e-05 |
| 13 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | -1.24502343999918 | 0.0129706666501152 |
| 14 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | 3.85014360986026 | 0.000351852267845699 |
| 15 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | 3.21438294761818 | 0.00252091830964673 |